Flavivirga abyssicola: Q4Q34_13525
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Entry
Q4Q34_13525 CDS
T09912
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fay
Flavivirga abyssicola
Pathway
fay03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fay00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q4Q34_13525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fay03019
]
Q4Q34_13525
03009 Ribosome biogenesis [BR:
fay03009
]
Q4Q34_13525
Enzymes [BR:
fay01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Q4Q34_13525
Messenger RNA biogenesis [BR:
fay03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Q4Q34_13525
Ribosome biogenesis [BR:
fay03009
]
Prokaryotic type
rRNA helicases
Q4Q34_13525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
HTH_CLF_N
FliG_M
Motif
Other DBs
NCBI-ProteinID:
WVK12241
LinkDB
All DBs
Position
complement(3209765..3211567)
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AA seq
600 aa
AA seq
DB search
MSTFQELGLNDDLLQAITDLGFIKPSEVQEKAIPILLESESDLVALAQTGTGKTAAFGFP
MLEKIDVNSRTTQGLILSPTRELCLQITNEMKQYGKYCKGLNVVAIYGGSSITDQAREVK
RGAQIIVATPGRMKDMISRRMVDISKIQYSVLDEADEMLNMGFKEDITDILSHTPEDKST
WLFSATMPKEVATIAKKFMSSPQEITVGNKNESTSNVSHEYYLVNARDRYQALKRLSDAN
PDIFSVVFCRTKRDTQKVAEQLIEDGYSAGALHGDLSQNQRDLVMKSFRNKQIQTLVATD
VAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKTGVSMVIVSKSEVRKIKSIERI
IKRQFEKKDIPDGAEICEVQLMSLANKIHNTEINHEIDKHLSSINELFEDTDKDELIKKF
FSVEFTRFYNYYQKSKNLNVSDDGGRDRDGGRDFGGKSNSTRYFINVGNKDGFDWMKLKD
FLKEQLQLGRDDVFKVEVKDSFSFFNTENELKEKVLAFFTDFKHEGRFVNVEVSENRGGG
RRGDRNRGRRRDDRKGGGRRDDRRSGSGNRSERRRSEGASKPRRSDSGNSGAFKPRRSRR
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgagcacattccaagaattaggtcttaatgacgacctattacaagcaattacagattta
gggtttataaaaccaagtgaagtccaagaaaaagcaatcccaattttattagagtctgaa
tcagatttagtggcattagcccaaacaggaactggtaaaacagcagcatttggtttccct
atgctagaaaaaattgatgtcaatagcagaactacacaaggtttaattttatctccaact
agagagctttgtttacagattaccaacgaaatgaagcaatacggaaagtattgtaaaggc
cttaatgtcgttgctatttatggtggatctagtattactgaccaagctagagaggtgaaa
agaggcgcgcaaattattgtagcgactcctggacgtatgaaggatatgattagcagacgt
atggttgatatttctaaaatacaatattctgttttagatgaagctgatgagatgctgaat
atgggttttaaggaagatataacggatatactttctcatacccctgaagacaaaagcact
tggttattttccgcaaccatgccaaaagaagtagctactattgctaaaaaattcatgagt
agtccacaggaaattacggttggaaataaaaatgaaagtacaagcaatgtatcgcacgaa
tattatttagtaaatgccagagatcgttaccaagctttaaaacgattatcggacgccaac
ccagatattttctcggtagtattttgtcgcaccaaacgagacactcagaaagtagcagaa
cagctcattgaagatggatatagtgctggcgctttacacggtgatttaagtcagaaccaa
cgtgacttagtcatgaaatcgtttagaaataaacagatacaaacactagtagctacggat
gtagctgcgcgtggcattgatgttgacgatattacccatgttataaattatcaattacca
gacgaaatcgaaacgtatactcaccgttctggacgaactggacgagctggtaaaacaggg
gtttctatggtgattgtttctaaaagtgaggtacgtaaaataaaaagtattgagcgtatt
attaaacgtcaattcgagaaaaaagatattccggatggagcggaaatttgtgaagtacaa
ttaatgtctcttgctaataaaatacataacactgagattaatcatgaaattgataagcat
ttatcaagtattaacgaattgtttgaagacacagataaggatgaattgattaaaaagttc
ttctctgttgagtttacacgtttctataattattatcaaaaatctaaaaacctaaatgtt
tctgatgatggtggtcgtgatcgagacggtggacgtgattttggaggcaagtccaattct
acacgctactttataaatgttggcaataaagatggttttgactggatgaagctaaaagac
ttcttaaaagaacagttacaacttggaagagatgatgtttttaaagtcgaagtaaaagat
agcttctcgttttttaatactgaaaatgaattaaaggaaaaagtattggctttctttaca
gactttaaacacgaaggtcgttttgtaaatgttgaagtatcagaaaatcgtggtggtgga
agacgaggcgacagaaaccgaggcagaaggcgtgatgatagaaaaggtggtggaagacgc
gacgatagaaggtctggctctggaaacagaagtgaaagacgtcgctctgaaggcgcttca
aaaccaagacgttctgattccggtaattctggcgcatttaaacctagacgatcaagacga
taa
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