Flavobacterium azooxidireducens: M0M57_02325
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Entry
M0M57_02325 CDS
T08660
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
faz
Flavobacterium azooxidireducens
Pathway
faz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
faz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
M0M57_02325 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
faz03021
]
M0M57_02325 (rpoC)
03400 DNA repair and recombination proteins [BR:
faz03400
]
M0M57_02325 (rpoC)
Enzymes [BR:
faz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
M0M57_02325 (rpoC)
Transcription machinery [BR:
faz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
M0M57_02325 (rpoC)
DNA repair and recombination proteins [BR:
faz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
M0M57_02325 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
DUF4825
Motif
Other DBs
NCBI-ProteinID:
UPQ79683
UniProt:
A0ABY4KFU4
LinkDB
All DBs
Position
complement(503689..507999)
Genome browser
AA seq
1436 aa
AA seq
DB search
MMNNRNNNKDKNPVKRFNKITIGLASPESILAESRGEVLKPETINYRTHKPERDGLFCER
IFGPVKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPIAHIWYFRSL
PNKIGYILGLPSKKLDMIIYYERYVVIQAGIAKNAEGESLSRLDFLTEEEYLNILDTLPM
ENQYLDDNDPNKFIAKMGAECIMDLLARTNLDELSYDLRHAANNETSKQRKTEALKRLNV
VESFREANLNRENRPEWMILKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRL
KRLMEIKAPEVILRNEKRMLQEAVDSLFDNTRKASAVKTESNRPLKSLSDSLKGKQGRFR
QNLLGKRVDYSARSVIVVGPELKLFECGLPKDMAAELYKPFVIRKLIERGIVKTVKSAKK
IIDKKEPVVWDILENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNA
DFDGDQMAVHLPLGPEAILEAQLLMLASHNILNPANGAPITVPSQDMVLGLYYMTKERLS
TPEHKILGEGLTFYSAEEVNIALNEGRLELNARVKIRAKDFNEKGELVFKLIQTTAGRVL
FNEVVPEAAGYINEVLTKKSLRDIIGRILSVTNVPTTAAFLDNMKDMGYKFAFRGGLSFS
LGDIIIPHQKQELIADAREEVDAITMNYNMGLITNNERYNQVIDVWTSKNALLTELAMKN
IREDQQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFKE
GLSILEYFISTHGARKGLADTALKTADAGYLTRRLHDVSQDVIVNTEDCGTLRGIEVSAL
KKNEEIVETLGERILGRVALQDVINPLNLEVLIEGGQEITEAIMKAIEASPLERVEVRSP
LTCEAAKGICAKCYGRNLATGRMTQKGEAVGVIAAQSIGEPGTQLTLRTFHVGGVAGGMS
EESTIVTRFKGRLELDDLKTVKGEDADGNAIDIVISRSTELKLVDENTGIVLNTHNIPYG
STIFVKDGQTVDKGTTICKWDPYNGVIISEFTGKIAYEDLEQGQSFQVEIDEQTGFQEKV
ISEGRNKKLIPTLLIYGKDGELIRSYNLPVGAHLMVDDGEKIKAGKILVKIPRRSSKTGD
ITGGLPRITELLEARNPSNPAVVSEIDGVVSFGKIKRGNREIIIESKFGEIKKYLVKLSN
QILVQENDFVKAGMSLSDGAITPEDILRIQGPSAVQQYLVNEIQEVYRLQGVKINDKHFE
VVIRQMMRKVRVEDPGDTLFLEEQLAHTKDFIIENDKLFGMKVVEDAGDSQNLKPGQMIT
PRELRDENSLLKREDKNLVLARDVITATATPVLQGITRASLQTKSFISAASFQETTKVLN
EAAVAGKVDTLEGLKENVIVGHRIPAGTGMREYDNNIVGSKEDYNELMAAKEEYNY
NT seq
4311 nt
NT seq
+upstream
nt +downstream
nt
atgatgaataatagaaataataataaagacaaaaatccagtaaagaggtttaataaaatt
actatcggtcttgcttcaccagaatcaattttggctgaatcaagaggagaagttcttaaa
cctgaaacaatcaattatagaacccacaaaccagaacgtgatggtcttttctgcgaacga
attttcggtccggtaaaagattatgaatgtgcttgtggaaaatataaaagaattcgctac
aaaggaatcgtatgtgaccgttgtggtgtggaagttactgagaaaaaagtacgtcgtgat
agagtaggacacatcaatttggttgtgccaatcgctcacatttggtatttccgttcgctt
ccaaacaaaattggatacattttaggtttaccatctaagaaattagatatgattatttac
tacgaaagatacgtagtaattcaagccggaattgccaaaaatgcagaaggtgaatcatta
tcaagattagactttttaactgaagaagagtatttaaatattttagatacacttccgatg
gaaaaccaatatttagatgataatgatccaaataaattcatcgccaaaatgggtgctgaa
tgtattatggatttattagctcgtacaaatcttgacgaattgtcatatgatttacgtcac
gcggctaacaatgaaacatctaaacagagaaaaacagaagcattaaaacgtcttaatgtt
gtagagtctttccgtgaagcaaatttaaacagagaaaatcgtccggaatggatgatttta
aaagtaattccggttattccaccagaattacgtccgttggtgccgcttgatggtggtcgt
tttgcaacatcagatttaaatgatttgtatcgtcgtgtaattattcgtaacaatcgttta
aaaagattaatggagatcaaagctcctgaagttatcttacgtaacgaaaaacgtatgttg
caagaagcggttgattcattatttgacaatacacgtaaagcatctgctgttaaaacagaa
tcaaacagaccattaaaatcactttcagattcattgaaaggtaaacaaggtcgtttccgt
caaaacttattaggaaaacgtgtggattattctgctcgttcagtaattgttgttggaccg
gaattgaaattgttcgaatgtggtttgccaaaagatatggctgctgagttgtataaaccg
ttcgttattcgaaaattaatcgaaagaggaatcgttaaaacagtaaagtcggctaagaaa
attatcgacaaaaaagagcctgtagtatgggacatccttgaaaatgtaatcaaaggtcat
ccagtattactaaaccgtgctcctacattacaccgtttaggtattcaagcattccaacca
aaattaatcgaaggaaaagcaattcaattacacccattagtgtgtacggcttttaacgcg
gattttgacggtgaccagatggcagttcacttgccacttggaccggaagctattttggaa
gcacaattattaatgttggcttctcacaatatcttgaaccctgccaacggagctccaatt
accgttccttctcaggatatggttttgggtctatattatatgaccaaagaacgtttgtct
actcccgaacataaaattttaggtgaaggcttaacgttttattctgccgaagaagtaaac
attgctttaaacgaaggaagattagaattgaatgctcgtgttaaaattagagcaaaagat
ttcaatgaaaaaggtgaattagtattcaaattaattcaaacaactgccggtagagtatta
tttaatgaagtagtaccggaagctgcaggatatatcaacgaagttttaaccaaaaaatca
ttaagagatattattggtagaattttatcggtaacaaatgtgccaacaactgctgctttc
ttggataacatgaaagacatgggatacaaattcgcattccgtggaggtttatcattcagt
ttaggtgatattatcattcctcaccaaaaacaagaattgattgccgatgcaagagaagaa
gtagatgcaattaccatgaactataacatgggattaatcactaacaacgaaagatacaat
caagttattgacgtttggacttctaaaaatgctttgttaacagaattagcaatgaaaaat
atccgtgaagaccaacaaggtttcaactcggtatatatgatgcttgattctggagcaagg
ggttctaaagagcaaattcgtcagttaaccggtatgcgtggtttgatggctaagcctaaa
aaatctactgctggtggtggtgaaattatcgaaaacccgattctttctaactttaaagaa
ggtctttcaattttagaatactttatttctacacacggagctcgtaaaggtcttgccgat
acggctttgaaaacggccgatgccggatacttaacaagaagattacatgacgtttctcaa
gatgttatcgtaaacacagaagattgtggtacgctaagaggaatcgaagtttctgctttg
aaaaagaatgaagaaatcgttgaaacgttaggcgaaagaattttaggtcgtgttgctctt
caagatgtaatcaacccattgaatttagaagttctaattgaaggtggtcaagaaattact
gaagcaatcatgaaagctatcgaagcttctcctttagaaagagtagaagtaagatcacca
ttaacgtgtgaagccgctaaaggaatctgtgcaaaatgttacggaagaaacttagcaaca
ggtcgaatgactcaaaaaggtgaagctgttggtgtaattgctgcacaatcgattggtgaa
ccaggtacacagttaacacttagaacgttccacgttggaggggttgcaggaggtatgtct
gaagaatcaaccattgtaacacgtttcaaaggaagattagaattagacgacttaaaaacg
gttaaaggcgaagatgctgatggaaatgcaattgacatcgtaatctctcgttcaacagaa
ttaaaattagttgacgaaaataccggaatcgttttaaatacacataacattccttatggt
tctaccatttttgtaaaagatggtcaaactgttgataaaggaacaacaatctgtaaatgg
gatccatataacggagttattatttccgaatttaccggaaaaattgcttacgaagattta
gaacaaggacaatcgttccaagttgaaatcgatgagcaaaccggtttccaagaaaaagta
atctcggaaggaagaaacaaaaaattaattccaactttattgatttatggtaaagacggc
gaattaattcgttcgtataacttaccggttggagctcacttgatggttgatgacggcgag
aaaattaaagcaggtaaaattttagtaaaaatcccaagacgttcgtcaaaaactggcgat
atcaccggaggtcttcctagaattaccgaacttttagaagctcgtaatccatctaaccca
gcagtagtatcagaaattgatggtgttgtttcgtttggaaaaatcaaaagaggtaaccgt
gaaatcatcatcgaatctaaatttggcgagattaaaaaatacttagtgaaattatctaac
caaatcttggttcaggaaaatgacttcgtaaaagcgggtatgtctttgtcagatggtgca
attacgccggaagatatcttgagaattcaaggtccatcggctgttcaacagtatttggta
aatgaaattcaagaagtttatcgtttacaaggggtaaaaatcaacgacaaacactttgaa
gtagttattcgtcaaatgatgcgtaaagtaagagtggaagatccgggagatacattattc
ttagaagagcaattggctcatacaaaagatttcatcatagaaaatgataaattatttgga
atgaaggtagttgaagatgctggagattctcaaaacttgaaaccaggtcaaatgattacg
ccacgagaattgcgtgatgaaaactcgttattaaaacgtgaagacaaaaacctagtattg
gctcgtgatgtaattacagctacagctacgccggttcttcaaggtattacgagagcttcg
cttcaaaccaaatcgtttatttctgcggcatcattccaggaaacaacaaaagtgttaaac
gaagcggctgtagctggaaaagtagatacgttagaaggcttgaaagaaaatgttattgtt
ggacacagaattcctgccggaactggtatgagagaatatgacaacaacatcgttggatca
aaagaagactataacgaattgatggctgcaaaagaagaatataattattaa
DBGET
integrated database retrieval system
