Flavobacterium azooxidireducens: M0M57_11480
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Entry
M0M57_11480 CDS
T08660
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
faz
Flavobacterium azooxidireducens
Brite
KEGG Orthology (KO) [BR:
faz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
faz03009
]
M0M57_11480 (rlmD)
Enzymes [BR:
faz01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
M0M57_11480 (rlmD)
Ribosome biogenesis [BR:
faz03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
M0M57_11480 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRM5-TYW2_MTfase
MTS
Cons_hypoth95
TRAM
Methyltransf_11
Methyltransf_15
PrmA
FtsJ
PCMT
UPF0020
N6_N4_Mtase
Methyltransf_12
Methyltransf_2
Motif
Other DBs
NCBI-ProteinID:
UPQ78239
LinkDB
All DBs
Position
complement(2627707..2629119)
Genome browser
AA seq
470 aa
AA seq
DB search
MGRKNTDKIIFTEVPVLDAGAKGVSVAKAEDGRVIFIPNVVPGDVVDVQTFKKRKSYFEG
KAIHFQKLSEHRVEPECQHFGVCGGCKWQNMKYSQQLFYKNNEVFNNLKRIGKIELPEFE
QILGSEKQFFYRNKMEFSFSDSRWLTENEIQNDNEIQDRNALGFHIPKMWDKILDIEKCH
LQQDPSNAIRNSLKEFATQNNIPFFNARNHGGLLRTLMIRTTSTGEVMVLIQFFKENKSQ
RELVLNFLSEKFPEITSLLYVINGKANDTLYDQDIKLFKGREYILEEMEGLQFSINAKSF
YQTNSEQAYELYKITREFAGLTGNELVYDLYTGTGTIAQFVSKKAKKVIGVEAVPEAIAD
AKENAKRNKITNCEFFVGDMKDVFNAEFIATHGKPDVIITDPPRDGMHATVVEQIMKIAP
EKVVYVSCNSATQARDLALMDSLYKVTRVRPVDMFPQTHHVENVVLLEKK
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgggaagaaagaatacagacaaaattatatttacggaagtacccgttttagatgccgga
gcaaaaggtgtttcggttgccaaagccgaagatggaagagttatatttattccgaatgtc
gtaccgggcgatgtggtggatgtgcaaacattcaaaaaaagaaaatcctattttgaagga
aaagcaattcattttcaaaaactttcagaacatagagttgaaccggaatgccaacatttt
ggtgtttgtggcggatgcaaatggcaaaacatgaaatacagccaacaattattttataaa
aataatgaggttttcaataatttaaaacgaattggaaaaattgaattaccggaatttgaa
caaattctaggctcagaaaaacagttcttttatcgaaataaaatggaattttctttttca
gatagcagatggcttaccgaaaatgaaattcaaaatgataacgaaattcaagacagaaat
gcgttaggttttcatattccgaaaatgtgggataagattctggatatagaaaaatgtcat
ttacagcaagatccttccaatgcaattagaaattcattaaaggaattcgctacacaaaat
aacattccgtttttcaatgccagaaatcatggcggtttattgagaacgttgatgattcga
accacttctaccggtgaagtcatggtgctgattcagttttttaaagaaaataaatcccaa
cgtgaattggtgttgaattttctttcggaaaaatttcccgaaatcacttctttactttat
gtgattaacggaaaagcaaatgatactttgtatgaccaagacatcaaattattcaaagga
agagaatatattttggaagaaatggaaggtttgcaattttcaatcaatgccaaatcattc
tatcaaaccaattcggaacaagcctacgaactatataaaattacccgagaatttgccggt
ttaaccggaaatgaattggtatatgatttgtataccggaacaggaacaattgcccaattt
gtttctaaaaaagcgaagaaagtaattggtgtagaagccgttccggaagctatcgccgat
gccaaagaaaatgcaaaacgcaataaaattaccaactgcgaattttttgttggtgatatg
aaagacgtatttaatgctgaatttattgccacacacggaaaacccgatgttattatcacc
gatccaccacgtgacggaatgcatgcaacagttgttgaacaaatcatgaaaattgcacct
gaaaaagtggtgtatgttagctgtaattcggccacacaagcccgtgacttagctttgatg
gattcgttgtataaagttactcgcgttcgtccggtagatatgtttccgcaaacgcatcat
gttgaaaatgttgtacttttagaaaaaaaataa
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