Flavobacterium azooxidireducens: M0M57_15920
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Entry
M0M57_15920 CDS
T08660
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
faz
Flavobacterium azooxidireducens
Pathway
faz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
faz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M0M57_15920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
faz03019
]
M0M57_15920
Enzymes [BR:
faz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M0M57_15920
Messenger RNA biogenesis [BR:
faz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M0M57_15920
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Fe-ADH
KR
P-loop_SecA
ERCC3_RAD25_C
HEM4
Hydrolase
Motif
Other DBs
NCBI-ProteinID:
UPQ79094
UniProt:
A0ABY4KEW1
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All DBs
Position
3666995..3668242
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AA seq
415 aa
AA seq
DB search
MTFQDLNLLQNIQHALSDEGYTTPTPIQQQAIPVILEGNDLVGCAQTGTGKTAAFAIPIL
NLLHRIVGSAQKRKNIRALVVTPTRELAIQIGESFETYGRYTNIRQLTIFGGVSQVPQVD
QLKKGVDVLIVTPGRLLDLHKQGFIDLDHLHTLVLDEADQMLDMGFINDVKKIIKLTPDN
RQTLLFSATMPIAIRELADSFLTKPKYVSVTPISSTAETVEQHIYFVNKEDKRKLLYHLI
RNEGLKQLLVFSRTKHGADNVVKALKKNGVNAEAIHGDKSQSARQRVLEAFKKNEISVLV
ATDIAARGIDIESLPYVLNFDLPNIPETYVHRIGRTGRAGNGGISISFCGKDEEVYWKDI
QKLVKVNVKTIKDHPYPWNDVEPVIEPEKKDYRNTKKATPSRKSDVSKKNKKRWY
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgacttttcaggatttaaatctacttcaaaatatacaacatgccttgtctgacgaaggc
tatacaacgcctactcctattcaacaacaagccattccggtaattttagaaggaaatgat
ttggttggatgtgctcaaaccggtaccggaaaaacggccgcttttgctattccgattctg
aatttgttgcacagaattgttggttcggctcaaaaacgcaaaaatattcgtgcgttagta
gttacaccaacacgagaattagctattcaaattggtgaaagttttgaaacctatggtcgt
tatactaatattcgtcaactcactatttttggtggtgtaagccaagttccgcaagtagat
cagttaaaaaaaggtgttgatgttttgattgttacacccggtcgtttgctggatttacac
aaacaaggttttatcgatttagaccatttgcatacattggttttagacgaagccgatcaa
atgttagacatgggttttataaatgatgtaaagaaaataatcaaattaactccggataac
agacaaactctattgttttcggctaccatgccaattgccattagagaattggccgatagc
tttttgaccaaaccaaaatatgtttcggttacaccaatttcatctacggctgaaacggtt
gaacaacacatttactttgtaaataaagaagacaaacgaaaattattatatcatttaatt
cgaaatgaaggcttgaagcaattattagtctttagccgaaccaagcacggagccgataat
gtggtaaaagccttgaagaaaaacggtgtaaatgccgaagcgattcacggagataaatcg
caatctgctcgtcaacgtgttttggaagcattcaaaaagaatgaaatttcagttttagtc
gctaccgatattgctgctcgcggaattgacattgaaagtttgccatatgttttgaacttc
gatttacctaatattcctgaaacgtatgttcaccgaattggtcgaacaggtcgtgcagga
aacggcggaatttcaatctctttttgtggaaaagacgaagaagtatattggaaagacatt
caaaaattggtgaaagtaaatgtaaaaaccatcaaagatcatccgtatccttggaatgat
gttgaaccggttattgaaccagagaaaaaagattatagaaatacgaagaaagcaactcct
tctcgtaaatcagatgtttctaaaaagaacaaaaaacgctggtactaa
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