Flavobacteriaceae bacterium 3519-10: FIC_00281
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Entry
FIC_00281 CDS
T00953
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fba
Flavobacteriaceae bacterium 3519-10
Pathway
fba03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fba00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FIC_00281
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fba03021
]
FIC_00281
03400 DNA repair and recombination proteins [BR:
fba03400
]
FIC_00281
Enzymes [BR:
fba01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FIC_00281
Transcription machinery [BR:
fba03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FIC_00281
DNA repair and recombination proteins [BR:
fba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FIC_00281
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Biotin_lipoyl
RnfC_N
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
ACU06749
UniProt:
C6X064
LinkDB
All DBs
Position
281384..285649
Genome browser
AA seq
1421 aa
AA seq
DB search
MSNKNKTSNFTKITIGLASPEIILQDSRGEVLKPETINYRTHKPERDGLFCEKIFGPVKD
YECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERIGHIGLVVPVAHIWYFRSLPNKIGYL
LGLPSKKLDMIIYYERYVVIQPGIAKRADGSDFDDKEFLTEEEYLDILETLPQENQYLDD
SDPNKFVAKMGAEAVEELLRRIDLDTLSFDLRHKAHNESSKQRRTEALKRLNVVEAIRGA
NTRMINRPEWMIMRVLPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLLEIK
APEVILRNEKRMLQESVDSLFDNTRKSSAVKSESNRPLKSLSDSLKGKQGRFRQNLLGKR
VDYSARSVIVVGPNLQLHECGIPKDMAAELYKPFIIRKLIERGIVKTVKSAKRIIDRKEP
VVYDILEGVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLVTTAFNADFDGDQM
AVHLPLGPEAILEAQLLMLGSQNILNPANGSPITVPSQDMVLGLYFMTKQLDSTDTMKVK
GEGLAFYSPEEVEIAYAEGQVSLNAKIRCRVPVQEEGEIVVRLTETTVGRVLFNQIVPKK
SGYVNELLTKKSLRNVIGRVLADTDFPTTVKFLDDMKDLGYSNAFKGGLSFSLGDIVIPV
EKKTMIAQAVENVDEIKANYNMGLITDTERYNQVIDVWTNTNAGLTEMIMTRMKTDQGGF
NSVYMMLDSGARGSKEQIRQLSGMRGLMAKPQKAGSTGAEIIENPIVANFKEGLSILEYF
ISTHGARKGLADTALKTADAGYLTRRLVDVAQDVIITENDCGTLRGTEVTPLKKNDEIVE
RLSERILGRVSLHNVYDPETDEVIANADELINEALAKKIEAAGLEFVEVRSPLTCETKKG
ICAKCYGRNLATGKPIHMGEAVGVIAAQSIGEPGTQLTLRTFHQGGTAGNISENPAIVAR
RDGIVEMDEVRTVTSENEEGKKAEILVSRSTEFRLVADNAARTPLMVANVPYGSELLVKP
GDKVKKGDTIAKWDPYNAVIIAESAGKVEYEDIIQGISFALEIDEQTGFEEKVISESRNK
KAVPTLKVVDPKGVEQKAYNLPVGAHLMVNDGEKIKAGKVLIKIPRKSAKSGDITGGLPR
VTELFEARNPSNPAVVTEIDGVVSYGKIKRGNRELIVEAKTGEISKYLVKLSNQILVQEN
DFVIAGSPLSDGSITPDDILKIKGPTAVQEYLVNEIQEVYRLQGVKIDDKHFEIIVRQMM
TKVSIVDGGDTQFLEGALEHKFDFLEENNRVFGLKVVTEAGDSKAFLPGQMITTKELRDE
NSKLKREDLALVEVREALPATATPVLQGITRAALQTKSFMSAASFQETTKVLNEAAVSGK
VDYLTGLKENVIVGHRIPAGTGLKDYQNVIVGSKKEFEDLN
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaataaaaataaaacaagtaatttcacaaagattacgatcggtctggcttctccc
gaaatcattttacaggattcaaggggtgaggttttaaagccggaaaccattaactataga
acccacaaaccggaaagagacggcttgttctgcgagaaaatcttcggtcctgtgaaggat
tacgaatgtgcttgtggaaaatacaagagaatccggtacaaaggaatcgtttgcgaccgt
tgtggggtggaagttaccgagaaaaaagtgcgtagagagcgtatcggccacatcggtctg
gtagttcctgtggctcacatctggtatttccgttcgttaccgaacaaaatcggttacctt
ttaggcttgccatccaaaaaactggatatgattatctattacgaaagatatgtcgtgatc
cagccgggtattgccaagagagccgacggttctgattttgatgataaagagtttttaacc
gaagaagaatatctggatatcctggagacgcttccgcaggaaaaccaatatcttgatgat
tcagatccaaataaatttgttgctaaaatgggtgcagaagcagttgaagaattgctcaga
agaatcgatttggatactttatccttcgatctgcgtcacaaagcacacaacgaatcttca
aaacagagaagaaccgaagcattaaaaagactgaatgttgttgaagcaatccgcggtgcc
aacaccagaatgattaaccgtccggaatggatgattatgcgtgtccttccggttatacca
ccagaactgagaccattggttccattggatggaggtagattcgcgacttcggatcttaat
gatctttaccgtcgtgtaatcatcagaaacaaccgtctgaagagacttttagagatcaaa
gctccggaagttatcttgagaaacgagaagcgtatgcttcaggaatcggtagattcatta
ttcgataatacaaggaaatcttctgcagtaaaatctgaatctaacagaccgttgaaatca
ctttcagattcattgaaaggtaaacaaggtcgtttccgtcagaacttacttgggaagcgt
gtggattattctgctcgttccgtaatcgtcgtaggtccaaacttacaattgcacgagtgc
ggtatcccgaaagatatggcggctgagctttacaaaccgtttatcatcagaaaactgatc
gaaagaggtattgtaaaaaccgtaaaatctgcaaaaagaatcatcgacagaaaagaacct
gttgtttatgatatcctggaaggcgtaatgaaaggtcaccctgtacttttgaacagagca
cctacgcttcacagacttggtatccaggcgttccagccaaaaatgatcgaaggaaaagcg
attcagcttcacccattggttacaacggcattcaacgcggatttcgatggtgaccagatg
gcggtacacttaccgttaggcccagaggctatcctggaagctcagcttttgatgttaggt
tctcagaatatccttaaccctgcgaacggatcaccaattacggtaccttctcaggacatg
gtattgggtctttatttcatgaccaagcagctggattctactgatacaatgaaagtgaaa
ggtgaaggtcttgccttctattcaccggaagaagtagaaatcgcttacgctgaaggtcag
gtttctcttaatgccaaaatcagatgtagagttccggtacaggaagaaggcgaaatcgtt
gttcgacttaccgaaactacagttggtagagtattgttcaaccagatcgtaccgaaaaaa
tcgggttacgtgaatgaactgcttaccaagaaatctctgagaaacgttattggtagagtt
ttagcggatacagatttccctacgacagtgaagttccttgatgatatgaaagacttaggt
tattcaaacgcattcaaaggaggtctttcatttagtttgggagatatcgtaattccggtt
gaaaagaaaaccatgatcgcgcaggcggtagaaaatgtagatgaaattaaggccaactat
aacatgggtcttattaccgatacagagcgttacaaccaggtaattgacgtttggaccaac
accaacgcaggattaaccgagatgattatgaccagaatgaaaaccgaccagggcgggttc
aattcagtttatatgatgcttgattccggtgcaaggggttcaaaagagcagatccgtcag
ctttcagggatgcgtggattgatggcgaagcctcaaaaagcgggttctacaggcgcggaa
attatcgaaaacccaattgtagcgaactttaaagaaggactttcgatcctcgagtacttt
atctccacccacggtgcgcgtaaaggtcttgcggataccgcacttaaaactgctgatgct
ggttacttgaccagaagattagtagatgttgcacaggatgtgatcattactgaaaacgac
tgtggtactttaagaggtacagaagtaactccattgaagaaaaacgacgagatcgtagag
agactttcggaaagaattttgggtagagtttctctgcacaacgtttacgatccggaaacc
gacgaagtaatcgcaaatgccgacgagctgattaacgaagctttagctaagaaaatcgaa
gcggcaggacttgaattcgttgaagtacgttcgccacttacttgtgaaaccaagaaaggg
atctgtgcgaaatgttacggacgaaaccttgcaacaggtaaacctattcacatgggtgaa
gctgttggtgttatcgctgcacagtccatcggtgagccgggaactcaacttacgctaaga
accttccaccagggtggtaccgcgggtaacatttcagaaaatccagctattgttgcacgt
cgcgacggtatcgtggaaatggacgaagtaagaaccgtaacgtcagaaaacgaagaaggc
aaaaaagctgaaatcctcgtttcacgttcaacggaattccgtttggttgcagacaatgca
gcacgtacgccgttgatggtagctaacgtaccttatggttctgagctattggtgaaacca
ggcgataaagtgaaaaaaggcgataccattgcgaaatgggatccgtataacgcggtaatt
attgctgaatctgccggtaaggtagagtatgaagacatcatccagggtatatcattcgcg
ctggaaattgatgagcagacaggtttcgaagagaaagtaatttctgagtcgagaaacaaa
aaagccgtacctacgctgaaagttgttgacccgaaaggtgttgagcagaaagcatataac
cttccggttggtgcccacttgatggtaaacgacggtgaaaaaattaaggctggtaaagtc
ctgatcaagatcccgagaaaatccgcaaaatcaggggatatcacgggtggtcttccgcgt
gtaaccgagcttttcgaagcaagaaatccttcaaacccggctgtagtaaccgagatcgac
ggggtagtttcttacggaaaaatcaagcgtggtaaccgtgaattgatcgttgaagccaaa
accggagaaatctctaaatatttggtgaaactttcaaaccagatcctcgttcaggaaaat
gacttcgtgattgccggttcgccgctttctgacgggtcaattacaccggacgatatcctg
aaaattaaaggcccaaccgccgttcaggaatatttggtgaatgaaattcaggaagtttac
cgtcttcagggggtaaaaattgatgataagcacttcgaaattatcgtaagacagatgatg
acgaaagtatctatcgttgatggtggcgacacccagttcctagaaggtgctcttgagcat
aaattcgatttcttagaggaaaacaaccgtgtatttggtcttaaagtagtaacagaagcc
ggagattctaaagcattcttgccaggtcagatgattactaccaaagaactcagagacgaa
aattctaaacttaaacgtgaagatttagccttggtagaagtacgcgaagcgttacctgca
accgcaacaccggttcttcagggtatcaccagagcggcgcttcaaaccaaatcgtttatg
tcggcagcttccttccaggaaacgaccaaagtactgaacgaagcggcagtttccggaaaa
gtagattacctcacaggccttaaagaaaacgtaattgtagggcacagaatccctgcagga
acgggtcttaaagactatcagaacgtaatcgtgggttcaaagaaagaattcgaagaccta
aactaa
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