Flavobacteriaceae bacterium 3519-10: FIC_00518
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Entry
FIC_00518 CDS
T00953
Name
(GenBank) Hydrolase (HAD superfamily)
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
fba
Flavobacteriaceae bacterium 3519-10
Pathway
fba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FIC_00518
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fba03019
]
FIC_00518
Messenger RNA biogenesis [BR:
fba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FIC_00518
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
DUF4954
Motif
Other DBs
NCBI-ProteinID:
ACU06976
UniProt:
C6WZD3
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All DBs
Position
528188..529762
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AA seq
524 aa
AA seq
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MTTTVAIIIGIVCLIAGAAIGMLFSKSSLNTKAKFILDDARKNAENLLDKANVQAESIRK
EKQLQAKEKFLELKSQHDADIQSREKKMQETEKRIKDKESKLNDELSKAGKLEKELERKI
GDYNKKHEIIEKKQQELEVATAQKVEMLEKIANYSAEDARNELVEAMKSEAKTRAQAHVQ
SIMEEASLNAKQEAKKIVIQTIQRIGTEQAIENSVSVFNIESDEVKGRIIGREGRNIRAL
EAATGVEIIVDDTPEAILLSCFDPVRREIARLSLHRLVTDGRIHPARIEEVVEKTKKQIE
EEIIEVGKRTVIDLGVHGLHPELVKIVGRMKFRSSYGQNLLQHSREVANIAATMAAELGL
NVKLAKRAGLLHDIGKVPEQESELPHALLGMQWAERYGENPEVINAIGAHHDEVEMTSLL
SPIIQVADAISGARPGARRQVLESYIQRLKDLEAAALSFDGVSSAYAIQAGRELRVMVES
SRVNDDQSSQLSYDISEKIQNELTYPGQVRVTVIRETRSVNIAR
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atgacaacaaccgtcgcaattattatcggtattgtatgcctcatcgcgggtgcagcaata
ggaatgctgttttcaaagagttcgctcaacacgaaagcgaagttcatcctggatgacgca
aggaaaaacgccgaaaacctacttgataaagccaatgtacaagccgaatccataagaaaa
gaaaagcagctgcaggctaaagagaagttcctcgagctgaaatcccagcacgatgccgac
atacagtcccgcgagaagaaaatgcaggaaactgaaaaacgcattaaagacaaagaaagt
aaactcaacgacgagcttagcaaagccggtaaactcgagaaagaactcgaacgtaaaatt
ggtgattataacaaaaagcacgaaatcatcgagaaaaagcagcaggaacttgaggtggct
actgcacagaaagtagaaatgcttgaaaaaatagcaaattattctgcagaagatgcccgc
aatgaattggtagaagccatgaaatcagaagccaaaacacgcgcccaggcgcacgtgcag
agcatcatggaggaggcgagccttaacgcaaaacaggaagccaagaaaattgttatccag
acgatccagagaatcggaactgagcaggcgatcgaaaactcggtttcagtatttaatatt
gaatctgatgaggttaaaggccgtatcattggtagagaaggtagaaatatacgtgccctc
gaagctgcaactggcgttgaaattattgtagatgatacaccggaagcgattctgctttca
tgttttgatcctgtaagaagagaaatcgccagactttcacttcacagattggtaactgac
ggaagaattcaccctgcaagaattgaagaagtggtggagaaaacaaaaaaacaaatcgaa
gaagaaataatcgaagttggtaaaagaactgttatcgatcttggcgtgcacggacttcac
ccggaacttgtaaaaatcgtaggtcgcatgaaattccgctcatcttacgggcagaacctt
cttcagcactcgcgcgaagtagcaaatattgctgcaacaatggctgcagaattaggactc
aatgtaaaactggcgaaaagagcaggcttactccatgatataggtaaagttcctgagcag
gaatctgagcttccacacgcgcttctggggatgcagtgggctgaaagatacggcgagaat
cctgaggttatcaacgcaattggtgctcaccatgatgaggttgaaatgacgtcacttctt
tcaccaatcattcaggtggcggatgcaatttctggcgcaagaccgggcgcaagacgtcag
gtgcttgaatcttatatccaaagattaaaagatctggaagctgcagccttaagctttgat
ggagtttcaagcgcatatgcaatccaggctggccgcgaactccgcgtaatggtagaaagc
agccgcgtaaacgacgaccagtcttcgcagttgtcttacgatatttccgaaaaaatccag
aacgaacttacgtatccgggccaggttcgggtaacagttatacgtgaaacccgatctgtg
aacatcgcacgataa
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