Flavobacteriaceae bacterium 3519-10: FIC_00733
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Entry
FIC_00733 CDS
T00953
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fba
Flavobacteriaceae bacterium 3519-10
Pathway
fba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FIC_00733
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fba03019
]
FIC_00733
03009 Ribosome biogenesis [BR:
fba03009
]
FIC_00733
Enzymes [BR:
fba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FIC_00733
Messenger RNA biogenesis [BR:
fba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FIC_00733
Ribosome biogenesis [BR:
fba03009
]
Prokaryotic type
rRNA helicases
FIC_00733
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ACU07188
LinkDB
All DBs
Position
766859..768574
Genome browser
AA seq
571 aa
AA seq
DB search
MNLFTETNLSPEILKAIGELGFESPTEIQKQTIPFISTDIRDLIALAQTGTGKTAAFSLP
ILDMIDDGSRKIQFLVLCPTRELCLQITKDIKNYSKYMNNIKTTAVYGGSSITDQIRSLR
DKPQIIVGTPGRVIDLINRKALDFSEIQWLVLDEADEMLSMGFKDDLETILRETPETKHT
YLFSATMNKEVERISKSYLTAPHRISVGSINEVKKNIKHEFYVVGYRHKKEALKRLIDAN
PNQYSILFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATD
VAARGLDVDSLTHVIHYSLPDDPEVFVHRSGRTGRAGKDGISMSLIKPEESRKLKQIKMS
TKIDIVEKKVPTGDAIIKAQVGGVFEKLFTEHLEFFNFDDALIPDLSEFTKEELVHKMLQ
LQLRELAMFYKDKNDLADQKFNADDRGGDSRRDRDRDRGRDRERGGDRGERREFSRDGGR
ESRDRKPRRNNTDMVRFFFNLGKKDQLKKMDMLEIINKSTAKSKKRPDIGDIEILEKFSF
FEVEKSFKDEVMKGMQSQKFKGKEMRAEIAG
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttacggaaaccaatttaagccctgaaatcttgaaggcaattggcgaactg
ggcttcgaaagtcccacagaaatccaaaaacagaccattccatttatctctacagatatt
cgcgatttaatcgcactagcgcagactgggacgggcaaaacagcagcattttcgcttccg
attttggatatgattgacgatggtagtcgcaaaatccaatttttggtgctttgtccgaca
agagaactgtgtcttcagattacgaaagacattaaaaattattcgaaatacatgaataac
atcaaaaccacagcggtttatggtggaagcagtattacggatcagatccgctcccttcgc
gacaaaccacagattatcgtgggaacgccgggccgtgtgatcgaccttattaacagaaaa
gcactcgacttttcagaaattcagtggctcgttttagacgaggcagatgaaatgctttca
atgggtttcaaagatgatttggaaactattttaagagaaacaccagaaaccaaacacact
tatttattctcagcaacgatgaataaagaggttgaacggatttctaaaagttatcttacc
gcgccgcaccgtatttcggtaggttctatcaatgaggttaagaaaaacatcaagcacgaa
ttttatgtggtaggttaccgtcataaaaaagaagctttgaagagacttatcgacgcaaac
cctaatcaatactcaattcttttctgccgtacccgtatggaaacgcaggaagttgctgac
tttttgatgcagaacggttatgcagcagatgcacttcacggtgatctttcgcaggcgcag
cgtgacacggtaatgaaaaaattccgtttgaagaatattgacattctggttgccactgat
gtagcggcgagaggtttggatgtagattcattaacacacgtgatccactattctttacct
gatgatcctgaagttttcgttcacagaagcggaagaacaggtagagcagggaaggacgga
atctcgatgtctttaattaagcctgaagaatcaagaaaattaaagcagatcaaaatgtcg
acgaaaattgacattgttgagaagaaagttccgaccggcgatgcgattatcaaggcgcag
gttggtggtgttttcgagaaattatttaccgaacacctcgagtttttcaatttcgacgac
gcgttgatcccggatttatcagaatttacaaaagaggagcttgttcataagatgttgcaa
ctgcaactgagagaacttgcaatgttctacaaggacaagaacgaccttgcagatcagaaa
ttcaatgctgacgaccgtggtggcgacagcagaagagaccgtgacagagatcgtggccgc
gaccgtgaaagaggtggtgaccgaggtgaacgtcgtgaattcagccgtgatggcggtaga
gaatcgagagaccgcaagccaagaagaaacaatactgatatggtgagatttttcttcaat
cttggtaagaaagaccagctgaagaagatggatatgctcgaaatcataaataaatctaca
gcaaaatccaagaaacgaccagacattggtgatattgaaatcttagagaaattttcattc
ttcgaggtagagaaatcgttcaaagatgaggtgatgaaaggtatgcagagccagaaattc
aaaggaaaagagatgagagctgaaatagccggataa
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