Flavobacteriaceae bacterium 3519-10: FIC_00740
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Entry
FIC_00740 CDS
T00953
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fba
Flavobacteriaceae bacterium 3519-10
Pathway
fba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FIC_00740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fba03019
]
FIC_00740
Enzymes [BR:
fba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FIC_00740
Messenger RNA biogenesis [BR:
fba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FIC_00740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_19
Cas3-like_C_2
Flavi_DEAD
HEM4
AAA_30
UvrD-helicase
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACU07195
UniProt:
C6X457
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All DBs
Position
complement(774018..775271)
Genome browser
AA seq
417 aa
AA seq
DB search
MNFTDLQLIDPIAKALQEEGYTQPTPIQAKAIPSILQGRDLLGTAQTGTGKTAAFAIPIL
QNLTEKNIRNNQIKALILTPTRELAIQIEESFNAYGRHLRLRNLVVFGGVKQSGQEAALK
KGVDILVATPGRLLDFISQGIISLKNLEIFVLDEADRMLDMGFVHDVKRIIKLLPPKRQT
LFFSATFPDEISKLANSMLTNPVKVEVAPVSATADTIKQKVYFVEKENKLELLTHILMND
ISDSVLVFSRTKHGADKIARKLQSHKISAEAIHGNKSQNQRQNALNNFKSGKTRILVATD
IAARGIDIDELKYVVNFELSDVSETYVHRIGRTGRAGADGSSISFVDGLDLVNLKSTEKL
IGKKIPVEKDHPFHTDNLKEEKRDSNNKPFTPRPRAQGRESIGSKKPNNKSNFTRNR
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
ttgaattttaccgacttacaacttatcgatcctatcgcgaaagcgctacaggaagaaggt
tacacgcagcctacaccaattcaggcaaaagcgatcccaagtatactgcagggccgcgac
cttttaggaacggcacagaccggaaccggaaaaacagccgctttcgccataccgattctg
cagaatttaacagaaaaaaacatcagaaataaccagatcaaagccttgatcttaacacca
acccgagagttggcgatccagattgaagaaagcttcaacgcttacggaagacaccttcgc
ctcagaaacctcgttgttttcggcggtgtaaaacaaagtgggcaggaagctgctttaaaa
aaaggcgtcgacatcctggtggctacgcccggaaggttgctcgattttatttcgcaggga
attatttctcttaaaaatctggaaattttcgttcttgacgaagccgaccgaatgctcgat
atgggctttgtgcacgatgtaaagagaattataaaactacttccaccaaaacgccagacg
ctgtttttttcagcaacattccctgatgagatcagcaaactggccaattcaatgcttacc
aatccggtaaaagtagaagtagcacccgtttcagccactgccgacaccattaagcagaaa
gtgtattttgtggaaaaagaaaacaaactcgaactgctgacacatatcctgatgaacgat
atttcagattctgtgcttgtattttcaagaacaaaacacggtgctgacaaaatcgcgcgg
aagctgcagtcgcacaaaatttctgcggaagccatccatggtaacaaatcgcagaaccaa
agacagaacgcactgaacaatttcaagtcgggcaaaacaagaattcttgttgcgacggat
attgcagcgcgcggaattgatattgatgaactgaaatatgtcgtaaatttcgaactttct
gatgtgtctgaaacctatgttcacaggatcggaagaaccggcagagctggtgcagatggt
agctccatctcttttgtagacggcctggatctggtgaatcttaaaagcaccgaaaaactg
atcggtaagaaaattccggttgagaaagaccatcccttccatacagacaacttaaaagaa
gaaaaaagagactcgaacaataaacctttcacgccgcggccaagagcgcaaggcagagaa
agcatcggttctaaaaaaccgaacaacaagagtaattttacgaggaatagataa
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