Flavobacteriaceae bacterium 3519-10: FIC_02346
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Entry
FIC_02346 CDS
T00953
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fba
Flavobacteriaceae bacterium 3519-10
Pathway
fba03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FIC_02346
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fba03400
]
FIC_02346
Enzymes [BR:
fba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FIC_02346
DNA repair and recombination proteins [BR:
fba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FIC_02346
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ACU08779
UniProt:
C6X2W6
LinkDB
All DBs
Position
complement(2525703..2529119)
Genome browser
AA seq
1138 aa
AA seq
DB search
MMQLKTIKETFLPDMLQNEFGKEIFENIDQFRHLSVKGSAGSAPSIFAAELFVTRKKTVL
FLIEDKEDALYATAEMEDLLGKENVLYFPATHLAPYQIEKTQNANLVLRTDVLNKLNASK
KPKVIIAPFSSLSEKVLRKEDFKAISHRIKVGESLDFDFTGELLQQFNFQLTDFVSEPGE
FSVRGGIVDVFSYSNEEPYRISFFGNEIESIKTFNIETQLTNGKVNEFQLVSNMNYAVSG
SKVSLLGLLPNDSFVVSVNAILATRKISDFFTKADEYYEALNKDIKHQPPAELFVSEEEF
LKDIAAFKHIDFTLDTLKTSQADTLLIQLNQTQQPGFHKNFELLLEDLVEKRNANFDIWI
SFSTEKQKERLEAIFKEISTPQEMISDSEDLPVFQQKAFFKSFKSELHEGFVDADHKISV
YTDHQIFDRYQRFKAKNTFAKSEQLTLKDLMQMKVGDYITHIDHGIGKFMGLVKVNNNGK
VQECFKLTYKNGDLLYVSIHSLHKISKYNGPDGREIVLSKLGSPAWKTLKQKTKAKVKQI
AFDLIRLYAKRKTAKGFAFTPDSYLQNELEASFIYEDTPDQEKATLDVKTDMEKETVMDR
LICGDVGFGKTEIAVRAAFKAATDGKQVAILVPTTILAFQHYRSFKERLKDFPVNISYMN
RFRTAKQKSETLKGLAEGKIDIVIGTHQLVSSTVKFKDLGLLIIDEEHKFGVAVKDKLKT
LKNNIDTLTLTATPIPRTLQFSLMAARDLSVIKTPPPNRQPVETSIVGFSEEIIRDAISY
EIQRDGQVYFINNRIENLKDIAGLIQRLVPDAKVITGHGQMEGKQLERNVLDFMEGKYDV
LVSTTIVESGVDVPNANTMFINDAQRFGMADLHQMRGRVGRSNRKAFCYLITPPFDMMTS
DARKRLEAIEQFSDLGSGFQIAMKDLEIRGAGDLLGGEQSGFINEMGFDTYQKIMQEALE
ELQNDEEFGELFENEEDRKKLFKSTKEVNIDTDLELMLPDVYVQSIEERLSLYQKLAEIQ
NRGDLRKFENELNDRFGALPPEAKNLLKSVELKWIAAEIGFDKIVVKNGVFLGYFPPNPQ
DKFYQSEKFRNIIAYLHQNPSEATLKEKVNKEGNQLMMRKENVQNVDEVNRVLERIIG
NT seq
3417 nt
NT seq
+upstream
nt +downstream
nt
ttgatgcagctaaaaaccattaaagaaaccttcctgccggacatgttgcagaacgaattc
ggcaaagaaatcttcgaaaacatagatcagttccggcacctttcggtgaaaggttctgcg
ggttcagcgccatccatatttgccgctgaacttttcgttacgcgcaaaaaaaccgtgctt
ttcctcattgaagataaggaagatgcgctgtatgccactgcagaaatggaggatttgctc
ggcaaagaaaacgtgctgtattttccggcgactcaccttgcgccgtaccagattgagaaa
acgcagaatgcgaatctggttttacgcaccgatgtactcaacaaactcaacgcttcaaaa
aagccgaaagtgatcatcgcaccgttttcgagcctgtctgaaaaagttttgcggaaagaa
gatttcaaggcaatttctcaccggattaaagtcggcgaaagtctggattttgattttacg
ggtgagctgctgcagcagttcaattttcagcttacagattttgtttcagaacccggagaa
ttctcggtgcgtggcggcattgtggatgttttctcctactcaaacgaagagccgtacagg
atcagttttttcgggaatgaaatcgaaagtatcaagacatttaatatcgaaacgcagctg
acgaacggaaaagtgaatgagtttcagttggtttctaacatgaattacgcggtttcggga
agcaaagtctcgctgcttgggcttctgccaaatgacagtttcgtggtttctgtgaatgcc
attcttgcgacgcgaaaaatttcggatttttttaccaaagcggacgagtattacgaagcg
ttaaacaaagatataaagcatcagccacccgctgaacttttcgtttcggaggaagagttt
cttaaagatattgcagcctttaaacatatagatttcacgctcgacactttaaaaacttcg
caggctgacacgcttttaattcaactcaatcaaactcagcagccgggttttcacaagaat
ttcgaacttttacttgaagatctggtcgaaaagcggaacgccaatttcgatatctggatt
tcgttttctacggaaaaacaaaaagaaagacttgaggctatttttaaggaaatttctaca
ccgcaggaaatgatatctgattccgaagatcttccggtatttcaacagaaagcgtttttt
aaatcgtttaaatctgaacttcatgaaggtttcgtagatgccgatcataaaatttcggtc
tatacggatcaccagattttcgaccgttaccaaagattcaaagcaaaaaatacatttgca
aaatcggagcagcttacgctgaaagacctgatgcagatgaaagtcggcgattacatcacg
catatcgaccacggaatcggcaaattcatgggtctggtgaaggtgaacaacaacggcaaa
gtgcaggaatgtttcaaactcacctataaaaacggcgatttgctgtacgtaagcattcac
tcacttcataaaatctcaaaatataacggaccggacggacgcgaaatcgtgttaagcaag
ctgggttcaccggcttggaaaactttaaagcagaaaaccaaagcgaaagtaaagcagatc
gcattcgacctgatcaggctttatgcgaagagaaaaacggccaaaggatttgctttcaca
cccgattcttacctgcagaatgaacttgaagccagctttatttacgaagatacacctgat
caggaaaaagcgacactcgacgtaaagacggacatggaaaaagaaaccgtgatggacagg
ctcatctgcggcgatgtaggtttcgggaagactgagattgcggttcgggcagctttcaaa
gcagcgacggacgggaagcaggttgcgattttggttccgaccactattctggcctttcag
cattaccgaagttttaaggaaaggcttaaagatttccctgtgaatatttcttacatgaac
cgcttccgcacggcaaaacagaaatctgagacgctgaaaggtttggctgaaggcaaaatc
gatatcgttatcggaacgcatcagctggtaagcagtacggtgaaatttaaggatttaggt
cttttaatcatcgatgaagagcacaagttcggtgtggcggtaaaggataaactgaagaca
ttaaaaaataacattgatacgctgacgttaactgcgacgccgattccaaggacacttcag
ttttcgctgatggccgcgcgggatttatcggtgatcaagacgccaccgccaaaccgtcag
cccgtcgaaaccagtattgtaggcttcagtgaagaaattatccgtgacgctatatcgtac
gaaatccagcgcgacgggcaggtttattttatcaataacaggattgaaaaccttaaagat
attgcaggacttatccaaaggcttgtgcctgatgctaaggtaattacgggccacggacag
atggaaggcaagcagctcgaacgcaacgtacttgacttcatggaaggtaaatatgacgtt
ttagtttctacaactattgttgaaagcggcgtagacgtgccgaacgccaacaccatgttc
atcaacgatgcgcagcgttttgggatggccgatctacaccagatgcgcggaagggtagga
cgaagcaaccgcaaagctttctgttatctgatcacgccgccgtttgatatgatgacatcg
gatgcaagaaaaagacttgaagcgatcgagcagttttcagatctcggaagcggcttccag
attgcgatgaaagaccttgaaatccgtggtgcgggcgatcttcttggcggtgagcagagt
ggtttcatcaatgaaatgggctttgatacgtaccagaaaattatgcaggaagcattggaa
gaacttcagaatgatgaggagttcggtgagcttttcgaaaatgaagaagaccgtaaaaaa
ttatttaaatccaccaaagaagtaaatatcgacactgatcttgaactgatgctgcccgat
gtttatgttcaaagcattgaagaaagactttcactttaccaaaaactggctgaaattcag
aaccgcggagatttaagaaaatttgaaaatgaacttaacgaccgtttcggagcattaccg
cctgaagctaaaaatctgttgaaatctgtggagctcaaatggattgcggctgagatcggt
ttcgataaaattgtagtgaaaaacggcgttttcttaggctattttccgccaaatccgcag
gataaattctatcagagtgaaaaattcaggaatatcattgcttatcttcaccaaaatcct
tccgaagcgacattaaaagaaaaagtgaataaagagggcaaccaactgatgatgcgcaaa
gaaaatgtgcagaatgtggatgaggtgaaccgggttttggaaagaattatcggataa
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integrated database retrieval system
