Flavobacteriaceae bacterium 3519-10: FIC_02382
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Entry
FIC_02382 CDS
T00953
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
fba
Flavobacteriaceae bacterium 3519-10
Pathway
fba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FIC_02382
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fba03021
]
FIC_02382
03019 Messenger RNA biogenesis [BR:
fba03019
]
FIC_02382
Transcription machinery [BR:
fba03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
FIC_02382
Messenger RNA biogenesis [BR:
fba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FIC_02382
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
NACHT
AAA_25
AAA_22
AAA
Mor
Motif
Other DBs
NCBI-ProteinID:
ACU08815
LinkDB
All DBs
Position
complement(2561262..2562842)
Genome browser
AA seq
526 aa
AA seq
DB search
MKVTDEAAVEKPAEVATEPAAPDSEQQSEPVAPKAAEEQDANRNPQKKRRQRTPPVKTDS
VSDEQAEETAPAVEAKTEQPRNQNPNQNSNQNQNQNPNQNGNQNGNSNANASQNPAKPQH
PNQKNQHKNQNQNPNQNRNQQNTENQEEAAKKEFNFDGLVTIEGVLEILPDNYGFLRSPD
FSYISSPDDVYVSTNQIRNYGLKTGDNVRGIVRLPKEGEKYFSLLKPTEVNGRDLEFIKD
RVSFEFLTPLFPEEKFNLTGPNSTLSTRIVDLFTPIGKGQRAMIVAQPKTGKTMLLKDIA
NAISANHPEAYMMILLIDERPEEVTDMERSVNAEVIASTFDEPADKHVKVANLVLSKAQR
MVECGHDVVILLDSITRLARAYNTVTPASGKILSGGVDANALHKPKRFFGAARNIEGGGS
LTIIATALIDTGSKMDEVIFEEFKGTGNMELQLDRKIANKRIYPAIDLVSSSTRRDDLLL
DETTMQRMWILRKYLADMNPVEAMEFVNKSIKGTRSNEEFLMSMNR
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagttacggatgaagccgctgttgaaaagcccgcagaggttgcaacagaacctgcc
gcacccgattcagaacagcaaagcgaaccggttgcgcctaaagctgctgaagagcaggat
gccaaccgtaatccgcagaaaaaacggagacagcgtacgccacctgtgaaaaccgattct
gtaagtgatgagcaggcagaggaaactgcgccggctgttgaagctaaaactgaacagcca
cggaatcagaatccgaatcagaattcaaaccagaatcagaatcaaaacccgaatcaaaac
ggaaaccagaacggaaacagcaacgcaaatgctagccagaaccctgcgaagcctcagcat
ccgaaccagaaaaatcagcataaaaaccagaaccaaaatcctaatcagaaccgcaaccag
caaaacactgaaaatcaggaagaagctgcgaaaaaagagtttaatttcgacggattggtt
accattgaaggcgtacttgaaattcttcccgataactacggtttcctgcgttctccggat
ttctcctatatttcgtctccggatgatgtgtacgtctctaccaaccaaatccgaaattat
ggtctgaagaccggcgataacgtaagaggaattgtgcgtctgccaaaggaaggcgaaaaa
tatttctcattattaaaacctactgaagttaacggaagggatctggaattcatcaaagac
agggtttcatttgaatttttgacgcccctttttcctgaggagaaatttaatcttacaggc
ccgaactccacactttctacacgaatcgtcgatttatttacacccatcggaaaaggccag
cgcgcaatgatcgtagcacagcctaaaaccggtaagacgatgttgcttaaagatattgcg
aacgccatttcagcgaaccatccagaagcgtacatgatgattttgctgattgacgagaga
cctgaagaggtaaccgacatggaaagaagcgtaaatgcagaagtaattgcgtctaccttc
gacgaacctgcagataaacacgtgaaagtggcgaatctggtactttctaaagcgcaacga
atggtagaatgcggccatgatgtggtgatattgttagattcaatcacccgtttggcgaga
gcctacaacaccgtaacgccggcttcaggtaaaattctttccggaggtgttgatgccaac
gcacttcataagccgaaaagatttttcggtgcggcgagaaacattgaaggtggcggatca
ttaaccattatcgctaccgcgctgatcgatacaggttctaaaatggatgaggtgattttc
gaagagttcaaaggaaccggaaatatggaacttcagctggatcgtaaaattgccaataag
cgaatttatcctgcaatcgacctggtatcttcaagtacaagaagagacgatttacttctt
gatgaaactacgatgcagcgtatgtggatcctcagaaaatatcttgcagatatgaatccg
gtagaagcgatggagtttgttaataaaagcatcaaaggcactcgcagcaatgaggaattc
ctgatgagcatgaacagatag
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