Maribacter sp. HTCC2170: FB2170_01677
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Entry
FB2170_01677 CDS
T01306
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
fbc
Maribacter sp. HTCC2170
Pathway
fbc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fbc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FB2170_01677
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fbc03021
]
FB2170_01677
03019 Messenger RNA biogenesis [BR:
fbc03019
]
FB2170_01677
Transcription machinery [BR:
fbc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
FB2170_01677
Messenger RNA biogenesis [BR:
fbc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FB2170_01677
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
NACHT
AAA_22
AAA
Motif
Other DBs
NCBI-ProteinID:
EAR00043
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All DBs
Position
638921..640552
Genome browser
AA seq
543 aa
AA seq
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MFEISDLKSKKLPELQEIAKGLKVPKFKSLKKLDLVYQILDLQAANPKATAELSTSPDPA
EKKKPAPRPKRARVAAEKKTESPKTENEKTEAVKPAQSETSKPPVKREQKQGNKPNPRPN
PNQNVKKDHHNKGQQHKNQHAKKPHHQKNGQDKRNSNFDKDLKNRYKEPEFEFDSIIASE
GVLDIMQDGYGFLRSSDYNYLSSPDDIYVSQSQIRLFGLKTGDTVLGNVRPPKEGEKYFP
LIKVNKINGIDPQVVRDRVSFEHLTPLFPDEKFNLSERQASISTRIIDLFSPIGKGQRGM
IVSQPKTGKTMLLKDVANAIAANHPEVYLIVLLIDERPEEVTDMQRNVQGEVVASTFDKE
ATEHVRVANIVLEKAKRLVECGHDVVILLDSITRLARAYNTVQPASGKVLSGGVDANALH
KPKRFFGAARNIEGGGSLSIIATALTDTGSKMDEVIFEEFKGTGNMELQLDRKISNRRIF
PAIDLTSSSTRRDDLLLDESTIQRMWILRKYLADMNPIEAMEFIEQRIKQTKNNEEFLMT
MNQ
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgttcgagatttcagatttaaaatcgaaaaagcttcctgaattgcaggaaatagcaaag
ggattgaaagtcccaaagttcaagagtttaaaaaaactggatttggtctaccaaatatta
gacctacaagctgcaaacccaaaggcaacagcggaactatcgacttcccctgaccctgcc
gagaaaaagaaacctgctcctagacctaaaagagcacgtgtcgctgcagaaaagaaaaca
gagagtcctaaaaccgagaatgagaagactgaggctgttaaaccagcacaatcagaaact
tctaaaccaccggtcaaaagagagcaaaaacaagggaataaaccaaacccaaggccaaat
cccaatcaaaatgtcaaaaaggaccatcacaataaaggtcagcaacataaaaatcaacat
gctaaaaaacctcatcatcaaaaaaatggtcaggataaacgtaacagcaattttgacaaa
gatcttaaaaacaggtacaaggaacctgagtttgaatttgatagtattatcgctagtgaa
ggtgtcttggacattatgcaagatggttatggtttcttaagatcatctgattacaactat
ctttcatcaccagatgatatttatgtttcccaatcacagattagattgtttggcttaaaa
actggtgatactgttttaggaaatgtgcgcccgccaaaagaaggtgaaaagtactttcct
ttaattaaagtgaacaaaataaatggtattgatccacaggttgttcgtgacagagtttct
tttgagcatctaacaccattgttccctgatgaaaaattcaatctttcagaacgtcaggcg
agcatatctacacgtatcatcgacttgttctctcctataggaaaagggcaaagaggtatg
atcgtatcacaaccaaagactggtaaaacgatgcttttgaaggatgttgcaaatgccatc
gctgccaatcatcctgaagtttatcttattgttttattgattgatgaacgccctgaagag
gtaaccgatatgcaacggaatgtacaaggcgaagtagttgcttctacttttgacaaagaa
gctacggagcatgttcgcgttgcgaacatagtgttggaaaaagcaaaacgtttggttgaa
tgtggacacgatgtagttatcttattagattcaattacccgcttggcaagagcatacaat
acggtacaaccagcatctggaaaggtattaagtggtggtgtagatgccaatgcattacat
aaaccaaaacgtttctttggagctgcccgtaatattgagggaggtggatcactttctatc
atcgcaacagcactaacggacactggatcaaaaatggacgaagttatatttgaggagttc
aaaggtaccggtaacatggaacttcaactggatcgcaagatcagtaatagaagaatattc
cctgctattgaccttacttcatccagcacacgtagagatgatttattacttgatgaaagc
acgattcaacgcatgtggatattgcgaaaatacctagcagacatgaatcctattgaagca
atggagtttattgagcaacgtattaaacagactaagaacaatgaagagttcttaatgaca
atgaatcagtag
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