Maribacter sp. HTCC2170: FB2170_14153
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Entry
FB2170_14153 CDS
T01306
Name
(GenBank) DEAD/DEAH box helicase-like protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fbc
Maribacter sp. HTCC2170
Pathway
fbc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fbc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FB2170_14153
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fbc03019
]
FB2170_14153
Enzymes [BR:
fbc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FB2170_14153
Messenger RNA biogenesis [BR:
fbc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FB2170_14153
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
ANIS5_cation-bd
Motif
Other DBs
NCBI-ProteinID:
EAR01677
UniProt:
A4AQD8
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Position
3434525..3435823
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AA seq
432 aa
AA seq
DB search
MTFKNLGIIEPILKALGQEGYSSPTPIQEQAVPILLKGKDLLGCAQTGTGKTAAFAIPIL
QQIHNDRQSNDRHRKIKALVVTPTRELAIQIGESFTAYGKFTGIRNTVIFGGVKQGKQTQ
ALKNGVDILIATPGRLLDLMNQGFISLRDIEYAVLDEADQMLDMGFIHDIRKIIAKLPPK
RQSLFFSATMPKDIVALSRTILGDFERVTIKPEQATAEKVEQLVYFVNKSNKVKLLVHLL
ENRPNSSVLVFSRTKHGANKIVKKLGQADIASAAIHGNKSQTARQKALGDFKAGELKVLI
ATDIAARGIDVDDLALVVNFDLPNVPETYVHRIGRTGRASASGIAISFCDRDEQPYLRDI
EKLIKQQVPRMPEHPFISDDSTEVLNPKQNKGNSGNRNRSSSQNRRKSNYRGGNKNNRRK
RNDNRNKSSGRD
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgacattcaaaaatttaggcataatagaacccatccttaaagctctggggcaagaaggt
tattcaagtccaacgcccattcaagagcaagctgttcccatacttttaaaaggcaaagac
cttttaggctgcgcacagaccggtaccggaaaaactgctgcgttcgctatccccatactt
caacaaatccataatgaccggcaatcaaatgaccgtcatcgaaaaatcaaggcattggtt
gtaacgccaacacgagaattggccattcaaataggtgagagttttactgcgtatggcaaa
ttcacaggaattagaaatacagtcatttttggtggagtaaaacaaggaaagcaaacgcag
gctctaaaaaacggagttgatatattaattgcaacaccaggacgattgttagatttaatg
aaccaaggctttatttcattaagagatatagaatatgctgttcttgatgaggcagaccaa
atgttggatatgggctttattcatgacattcgaaaaatcattgccaaattacctccaaaa
agacaatcacttttcttttcagctactatgcccaaagatattgtagcactatcacgaacc
attttaggtgattttgagcgtgttaccataaaacccgaacaagctacagcagaaaaagta
gaacaactggtatacttcgttaataaatcgaacaaggttaaattactggtacatctactg
gagaacaggccgaatagttcagttttggttttctcaagaaccaaacatggagcaaacaag
attgttaaaaaattaggacaggctgatattgcctcagccgctattcatgggaacaaatca
caaacggcaagacaaaaagccttaggtgattttaaggccggagaactaaaagtattgatt
gccaccgacattgccgcccgaggtatagatgttgatgacctggccttggtagtgaacttt
gatttacctaatgttccggaaacctatgtgcaccgaataggtagaactggaagggcaagc
gcaagtggtattgccatttcattttgtgatagggatgaacaaccttatctacgtgatatt
gaaaagcttattaaacaacaagtgccaagaatgccagaacatccgttcatcagcgatgat
tcaacggaagtgcttaatcccaaacaaaataaggggaattcaggtaatcgaaataggtcc
tcatctcaaaacagaagaaaatcaaattatcgaggaggcaataaaaacaatcgaaggaag
agaaacgataacaggaacaagtctagtggaagagattag
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