Maribacter sp. HTCC2170: FB2170_16176
Help
Entry
FB2170_16176 CDS
T01306
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fbc
Maribacter sp. HTCC2170
Pathway
fbc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fbc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FB2170_16176
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fbc03021
]
FB2170_16176
03400 DNA repair and recombination proteins [BR:
fbc03400
]
FB2170_16176
Enzymes [BR:
fbc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FB2170_16176
Transcription machinery [BR:
fbc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FB2170_16176
DNA repair and recombination proteins [BR:
fbc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FB2170_16176
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
EAR00638
LinkDB
All DBs
Position
complement(20911..25209)
Genome browser
AA seq
1432 aa
AA seq
DB search
MARIKDNNPIKRFDKISIGLASPEAILAESRGEVLKPETINYRTHKPERDGLFCERIFGP
VKDYECACGKYKRIRYRGIVCDRCGVEVTEKKVRRDRVGHINLVVPVAHIWYFRSLPNKI
GYLLGLPSKKLDMIIYYERYVVIQPGVAKGPEGEEVNKMDFLTEEEYLNILESIPQENQY
LEDSDPNKFIAKMGAECLIDLLARIDLQELSYELRHKANTETSKQRKTEALKRLQVVEAL
RESQENRENRPEWMIMKVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLV
EIKAPEVILRNEKRMLQESVDSLFDNTRKASAVKTESNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPELKLFECGLPKDMAAELYKPFVIRKLIERGIVKTVKSAKKIIDK
KEPVVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIRLHPLVCTAFNADFDG
DQMAVHLPLGPEAILEAQLLMLASHNILNPANGSPITVPSQDMVLGLYYMTKERKSTKEV
PVIGEGLTFYSYEEVEIAFNEGKVNLNAGIKVRAMDFNEEGELVNQIIPTTVGRVLFNME
VPEAAGYINDVLNKKSLRDIIGKILAVTDVPTTADFLDKIKTMGYDFAFKGGLSFSLGDI
IIPPEKHGMIDDANGQVDGIMANYNMGLITNNERYNQVIDVWTSTNAMLTELAMKRIRED
QQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIINIDDCETLRGIAVESLKKNE
EVVETLGERILGRVSLHDVHNPLTDELLLTAGQQIMEEDVKKVEASPIEKIEVRSALTCE
AQKGICAKCYGRNLSTNKMVQRGEAVGVVAAQSIGEPGTQLTLRTFHVGGIAGNISEDNK
LVAKFDGVAEIEDLRTVKGEDGEGKAATIVISRTSEIKIVDAKTGITLSTNNIPYGSQLF
IKNGAKIKSEDVVCQWDPYNGVIVSEFPGKIAYENIEQGVTYQVEIDEQTGFQEKVISES
RNKKLIPTLLIMNNKDEVLRSYNLPVGSHLMVDDGDKIKEGKILVKIPRKSAKAGDITGG
LPRVTELFEARNPSNPAVVSEIDGVVSFGKIKRGNREIIIESKLGEIKKYLVKLSNQILV
QENDYVRAGMPLSDGSITPEDILSIKGPSAVQQYLVNEVQEVYRLQGVKINDKHFEVVVR
QMMRKVRIQDPGDTIFLENQLIHKSDFIKENDEIFGKKVVVEAGESENLRAGQIITAREL
RDENSVLRRSDKTLVEARDAVAATATPILQGITRASLQTKSFISAASFQETTKVLNEAAV
SGKVDTLEGLKENVIVGHKIPAGTGMRDYESIIVGSKEEYDEIMARKEALKF
NT seq
4299 nt
NT seq
+upstream
nt +downstream
nt
atggctagaataaaagataataacccaataaaaaggttcgataagatttcaatcggttta
gcctctccagaagcaattttggcggagtcaagaggagaagttttaaaacctgaaactatt
aactacagaacacacaagcctgagcgtgacggtcttttctgtgagcgaatttttggtcct
gtaaaggattatgaatgtgcttgtggtaaatataaaagaatccgttaccgtggtatcgtc
tgtgatcgttgtggggtagaggttaccgagaaaaaagtacgtagagatagggtagggcat
atcaatttggtagttcctgtagcccatatatggtacttccgttctttgccaaataaaatt
ggataccttctaggattgccatccaagaaattggatatgataatttactacgaacgttat
gtcgtaattcagccaggggttgccaaaggtcctgaaggggaagaagtgaataagatggat
ttcttgacagaagaggaatacttgaacatcttggaatctattccacaggaaaatcaatat
ttagaagattctgatcctaataagttcattgctaaaatgggtgctgaatgtcttattgat
ttattggcacgtattgacctccaagagttatcgtacgaattaagacataaagccaacact
gaaacttccaaacagcgtaaaactgaggcgttaaagcgtcttcaggttgttgaagcttta
agggaatctcaagagaatagggaaaatagacctgaatggatgattatgaaagtggttcct
gttattccaccagaattacgtccgttggttccattggatggaggtcgttttgctacttca
gatttaaatgatttgtacagaagggtgattatcagaaacaatcgcctaaagcgattggtt
gaaataaaagcacctgaggtaattcttaggaatgagaagcgtatgcttcaggaatctgtt
gattccttgtttgacaacacaagaaaagcctcagctgttaaaacagaatcgaataggcct
ttaaaatcactttctgactcattaaaaggtaagcaaggacgtttccgtcaaaaccttttg
ggtaaacgtgtagattattctgctcgttcggtaatcgttgttggtccagaattgaagttg
ttcgaatgtgggttgccaaaagatatggcagccgagctttacaagccttttgttattcgt
aaattaattgaaaggggtattgtgaaaaccgttaaatcggctaaaaaaataatagacaag
aaagaacctgtagtttgggatattctggaaaatgttctaaaagggcatccagtattattg
aaccgtgctcctacattgcacagattgggtatccaagcttttcagccaaaattaatcgag
ggaaaagcaattcgtttgcacccattggtttgtactgcatttaacgcggattttgatggt
gatcaaatggcagttcacttaccattgggccctgaggcaattttggaagctcagctattg
atgcttgcatctcataatatattgaaccctgctaatggttctccgataacagtaccttct
caggatatggtcttgggtctatattatatgaccaaggagcgaaaatctaccaaagaagta
ccggttataggtgaaggattaaccttttactcgtatgaagaggtggaaattgcttttaat
gaaggcaaggttaatctcaatgccggaattaaggtacgggccatggattttaatgaagaa
ggagaattagtgaaccaaattattccaacaactgttggtagagttttgttcaacatggag
gttcctgaagcggctggttacattaatgatgttttgaacaaaaaatcattaagagatatc
atcggtaagattcttgccgttactgatgtccctacgacagctgatttcttggacaagatc
aaaactatgggatatgacttcgcctttaaaggtggtctttctttcagtttgggcgatatt
ataattccacctgaaaaacatggcatgatagatgacgccaatggtcaggttgatggtatt
atggctaactataatatgggtcttatcaccaacaatgaacgttataatcaagtaattgat
gtttggacttcaacgaatgcaatgttgacagagttggcaatgaaacgtattcgcgaagat
caacaaggattcaattctgtatatatgatgttggattcaggtgcgaggggttctaaagag
caaattcgccagttgaccggtatgcgtggattaatggccaagcctaaaaagtctactgca
ggaggtggagaaattattgaaaacccgattctttctaactttaaggaggggctttcgatt
ttggaatactttatctcaactcacggtgcacgtaaaggacttgcagataccgccttgaaa
acggctgatgcgggatatttaacacgtcgtttggttgatgtttcacaggatgttattatt
aacattgacgattgtgagactttaagaggaattgcggttgaatctttaaagaaaaatgaa
gaagttgttgagactttaggggagagaattcttggtagggtttccttacatgatgttcat
aacccattgacagatgagcttttattgactgccggacagcagattatggaagaagatgtt
aagaaagttgaggcatctccgatagaaaaaattgaagtacgttctgcattaacttgcgaa
gctcaaaaaggtatttgtgccaaatgttatggtagaaacctttctaccaataaaatggta
caaagaggtgaggcagttggtgttgttgccgcacaatctattggtgaaccaggaacacag
ttaacacttcgtactttccacgtgggaggtattgccggtaacatttctgaggataataaa
ttggttgccaaattcgatggtgttgcagaaatcgaagacctgagaacagttaaaggagaa
gatggtgaaggtaaagcagcaacaattgttatttcaagaacatctgaaataaaaatagtg
gatgcaaaaactggtataacactaagtaccaacaacattccttatggttcgcaattattc
attaagaacggagccaaaataaagagtgaagatgttgtttgtcaatgggatccatataac
ggtgtaatcgtttctgaatttcctggtaaaatagcatatgagaatattgaacaaggagtt
acataccaggttgaaattgatgagcaaactggattccaagagaaagtaatctctgaatct
aggaataagaaacttattccaacattgttgattatgaacaataaggatgaagtgcttcgt
tcatataacctacctgtaggttctcaccttatggtggatgatggggataagattaaggaa
ggaaaaatcttggtaaaaataccccgtaaatcggctaaagcgggtgatattacaggtgga
cttccaagggtgacagaattattcgaagctagaaatccctctaacccagcagttgtttct
gagattgacggtgtagtttcttttggtaaaataaagagaggtaaccgtgagataatcata
gaatccaagttaggcgagatcaagaaatacttggttaaattatctaaccaaattttggtt
caggagaatgattatgtacgcgcaggtatgccactttcagatggttcaataactccagaa
gatattctttcaatcaaaggtccttcagctgttcagcaatatttggtgaacgaagtacag
gaggtttatcgtttacagggtgtgaaaatcaatgataaacactttgaggttgtagtaagg
caaatgatgcgaaaagtacgtattcaagatccgggagatactattttcttagagaatcaa
ttgattcataaatctgatttcatcaaggaaaacgatgagatttttggtaaaaaagttgtt
gtcgaagctggtgaatcagagaatttaagagctggccagattataacagcacgtgaatta
agagatgaaaattcggtgcttcgaagatctgataagaccttggtagaagccagagatgct
gtagctgcaactgccacaccaattcttcagggtattacaagagcttcattacagacgaaa
tctttcatttctgctgcctcattccaggaaacgacaaaagtattaaacgaagctgcagtt
agcggtaaagtagatactcttgaaggattaaaggaaaatgtaattgtaggtcataagata
ccggctggtactggtatgcgtgattatgaaagcattatagtaggttccaaagaggagtat
gatgaaataatggcacgaaaagaagctttaaaattttaa
DBGET
integrated database retrieval system
