Aureibaculum algae: FF125_21650
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Entry
FF125_21650 CDS
T06009
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
fbe
Aureibaculum algae
Pathway
fbe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fbe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FF125_21650 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fbe03019
]
FF125_21650 (rnr)
03016 Transfer RNA biogenesis [BR:
fbe03016
]
FF125_21650 (rnr)
Enzymes [BR:
fbe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FF125_21650 (rnr)
Messenger RNA biogenesis [BR:
fbe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FF125_21650 (rnr)
Transfer RNA biogenesis [BR:
fbe03016
]
Prokaryotic type
tRNA degradation factors
FF125_21650 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_RNR_1st
DUF4143
Motif
Other DBs
NCBI-ProteinID:
QCX40924
UniProt:
A0A5B7TZT9
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All DBs
Position
5119984..5122191
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AA seq
735 aa
AA seq
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MSKKRFQYKKKGNVVKDLSTKILKTLNQNSKQSFNYKQIAASLDITDANGRQQIIQNLEA
LKLKERIEETEKGKYKIIQNEHYHVGILDVTSNKNAYFISDTLEHDAFIPTINLNRGLDG
DTVKVYVYRRRNNDKFEGEVTEIIERAKTEFVGVLQMSKNFGFVIPDNNKMYADIFISKN
NIDGAEHGDKVLAELTDWPDNSKNPFGKIITVLGKPGEHDTEIHSILLEYGLPYQFPEKV
EDDATKLVTEVSAKDISERRDMRKTLTFTIDPKDAKDFDDALSFKELDNGNFEIGIHIAD
VSHYVQPDTILDQEAYERATSVYLVDRVVPMLPEVLSNGVCSLRPNEEKLTFSAVFEMDQ
KGHVINEWFGRTVTYSDQRFAYEEAQHIIETFENTIPEDISITGKSYKVTDEIVKATLKL
DELAKKLRKRRLQQGAITFDRVEVKFNLNEDAEPTGVYFKESKDANKLIEEFMLLANKKV
AEFVGKKKNGTPTKNTFIYRIHDEPNSDKLAGLQEIISKFGYKINTQTKETTSNSLNKLL
SDVHGKPEENMIETLTIRSMSKAIYTTDNIGHYGLAFDYYSHFTSPIRRYPDVMTHRLLQ
HYLDGGKSPDAAPYEKRCEHSSEREMLASKAERDSIKYMQVKYMQNHQDEEFVGVISGVT
EWGIYIEIISNKCEGMVRTRDIKDDYYIYDEKQYALVGQSTKNLYQLGDEVTVKVKKTDL
ERKHLDFYLINGNGD
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaaagagatttcaatataaaaagaaaggtaatgtagttaaagatttatctaca
aaaattttaaaaacattaaatcaaaattcaaaacagtcgtttaattataaacaaatagct
gcgagtttagatattacagatgctaatggtagacaacaaattatacaaaatttggaagcc
ttaaagctaaaggaaagaatagaagaaactgaaaaaggtaaatataaaattatacaaaac
gaacattaccatgttggtatattagatgttacatctaataaaaatgcctattttatttca
gatactttagagcacgatgcttttataccaacgataaatttaaatcgtggtttagatggt
gatacggtaaaagtttatgtgtatagaaggcgaaataatgataagttcgaaggtgaggta
actgagattatagaacgtgctaaaactgaatttgttggtgttttacaaatgagtaaaaat
ttcggatttgtaatacctgacaacaataagatgtatgcagatatttttatatctaaaaat
aatatcgacggagcagaacatggagataaagtgttggctgaattgacagattggccagat
aattctaagaatccttttggtaaaattattacagttttaggtaaacctggagaacatgat
actgaaattcattccattttattagaatatggtcttccatatcagtttcctgaaaaagtt
gaggatgatgccactaaattagtaactgaagtgagtgcaaaagatatttcggaacgtcga
gatatgcgtaaaactttaacttttactatagatcctaaagatgctaaagattttgatgat
gcattgtcatttaaagaactagataatggtaattttgaaataggaattcatattgcagat
gtatcgcattatgtgcaaccagatactattttagatcaagaagcttatgaaagagcaact
tcagtatatttagtggatagagttgtacctatgttgccagaagtattgtctaatggagta
tgttctttaagacctaatgaagaaaaattaaccttttcggccgtttttgaaatggaccaa
aaaggacatgttataaacgaatggtttggtagaacggttacatattcagaccaacgtttt
gcatatgaagaagctcaacatataatagaaacttttgaaaatacaattcctgaggatata
tcgataacaggcaaaagttataaagtaactgatgaaattgtaaaggcaactttaaagtta
gacgaactggcaaaaaaacttagaaaaagacgcttacaacaaggagcaattacttttgat
agggtagaagtgaagtttaatttaaatgaagatgctgaaccaactggggtctattttaaa
gaatctaaagatgctaataagctaattgaagaatttatgcttttagctaataaaaaagtt
gctgaatttgtaggaaaaaagaaaaatggtacacctacaaaaaatacctttatttacaga
atacatgatgaacccaattctgataaactagcaggtttacaggaaattataagtaagttt
ggatataaaattaatacccaaacaaaagaaacaacttctaattcattaaacaagctgtta
agtgatgttcatggtaagccggaagagaacatgatagaaactttaactatccgttcaatg
agcaaagcaatttatactactgataatattggacactacggattagcatttgactattac
agtcattttacatcacctattagacgttatcctgatgtgatgacacatagattacttcaa
cattatttagatggaggaaaatcgcccgatgcagcaccttatgagaaaagatgtgaacac
tcttcagaaagagagatgttagcctctaaagcagaacgtgattctattaaatatatgcag
gttaaatacatgcaaaatcatcaagatgaagaatttgtaggtgtgatatctggggttact
gaatggggtatttatatagaaattatatcaaataagtgtgaaggaatggtgcgtactcga
gatattaaggacgattattatatctatgatgaaaagcaatacgctttggttggacagtct
acaaagaatttatatcagttaggagatgaagttactgtaaaagtaaaaaagacagattta
gaacgtaaacacttagatttttacttgataaatggaaatggtgattaa
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