Flavobacterium bizetiae: L0669_00700
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Entry
L0669_00700 CDS
T08699
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
fbi
Flavobacterium bizetiae
Pathway
fbi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L0669_00700 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fbi03019
]
L0669_00700 (rny)
Messenger RNA biogenesis [BR:
fbi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
L0669_00700 (rny)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
KH_2
HTH_37
Motif
Other DBs
NCBI-ProteinID:
UTN04436
LinkDB
All DBs
Position
139388..140950
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AA seq
520 aa
AA seq
DB search
MDIITIIISGIIGIAAGFAIAKIIEKSNISNLIKNAKKEASSILKDANLEAENIKKDKIL
QAKEKFIELKSEHEQVILARDKKVAEVEKRVRDKESQVSNELSKAKKVNDDFEAKTNEYN
NKIEVLDKKQAEVDKLHKSQLQQLEVISGLSAEEAKEQLVEGLKAEAKSKAMSHIQDTIE
EAKLTAQQEAKKIIINTIQRVGTEEAVENCVSVFNIESDDVKGRIIGREGRNIRALEAAT
GVEIIVDDTPEAIILSCFDPVRREIARLSLHKLVTDGRIHPARIEEVVAKTAKQIDDEII
EVGKRTVIDLGIHGLHPELIKVVGRMKYRSSYGQNLLQHSREVSKLCGIMAAELGLNVKL
AKRAGLLHDIGKVPDTESDLPHALLGMQWAEKYGEKEEVCNAIGAHHDEIEMKSLLSPIV
QVCDAISGARPGARRQVLDSYIQRLKDLEEVAYGFSGVKNAYAIQAGRELRVIVESEKVS
DDNAANLSFEISQKIQTEMTYPGQVKVTVIRETRAVNIAK
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atggacataataacgatcattatttcaggtattatagggattgcggcaggttttgcaatc
gctaaaattatcgaaaaaagcaatatttctaatctaatcaagaacgcaaaaaaagaagct
tcttcaattttaaaagatgctaatttagaagcagagaacattaaaaaagataaaattctt
caggctaaagaaaaattcattgaattaaaatctgagcatgaacaagttattttagcgaga
gataaaaaagtagcagaagtagaaaaaagagttcgcgataaagaatctcaggtttctaac
gaactttctaaagctaaaaaagtaaacgacgattttgaagctaaaacaaacgaatacaac
aacaaaattgaagttttagataaaaaacaagctgaagttgacaaactacacaaaagtcaa
ttgcaacaacttgaagtaatttcagggctttctgctgaagaagcaaaagaacaattggtt
gaaggtttaaaagctgaagcgaagagtaaagcaatgtctcatattcaggataccattgaa
gaggctaaacttacagcacagcaagaagctaaaaaaatcatcattaatacaattcaaaga
gttggaactgaggaagcagttgaaaattgcgtttcagtatttaacattgaatctgatgat
gtaaaaggcagaattattggtcgtgaaggtcgtaacattagagcgcttgaagctgcaacc
ggagttgaaatcattgttgatgatacaccagaagctattattctttcttgttttgatcct
gttcgtagagaaatcgcccgtttgtcattacacaaattggtaactgacggacgtattcac
ccggcaagaattgaagaagttgttgctaaaacggctaaacaaatcgacgacgaaattatc
gaagttggtaaacgtacggttatcgatttaggaattcacggtttacacccggaattgata
aaagttgtaggtagaatgaaataccgttcatcttacggacaaaacttattgcaacactca
agagaggtttctaagctttgtggtatcatggcggctgaattagggcttaacgtaaaactg
gcaaaaagagcaggtttactacacgatattggtaaagtgccggatactgaaagtgattta
cctcacgcattattaggtatgcaatgggcagagaaatatggtgaaaaagaagaagtttgt
aacgccattggagctcaccacgacgagatcgaaatgaaatcattactttctcctatcgtt
caggtttgtgatgctatttcaggagctagaccaggagctagacgtcaggttttagattca
tacattcagcgtttgaaagatcttgaagaagtggcttacggttttagcggtgtaaaaaat
gcatacgcaattcaggctggtagagaacttcgtgtaattgtagaaagcgaaaaagtttct
gatgataatgcagcaaacttatctttcgagatttcacaaaaaatccaaactgagatgact
tatccaggtcaggtaaaagtaactgtaattagagaaacaagagcagtaaatattgcgaag
taa
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