Flavobacterium bizetiae: L0669_00790
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Entry
L0669_00790 CDS
T08699
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fbi
Flavobacterium bizetiae
Pathway
fbi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L0669_00790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fbi03019
]
L0669_00790
03400 DNA repair and recombination proteins [BR:
fbi03400
]
L0669_00790
Enzymes [BR:
fbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L0669_00790
Messenger RNA biogenesis [BR:
fbi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L0669_00790
DNA repair and recombination proteins [BR:
fbi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
L0669_00790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
TrmB
DnaD_N
DUF2582
DUF7343
MarR
Motif
Other DBs
NCBI-ProteinID:
UTN04453
LinkDB
All DBs
Position
158125..160020
Genome browser
AA seq
631 aa
AA seq
DB search
MPEAQKILLKYWKHDSFRPLQKEIIDSVLDGQDTFALLPTGGGKSICFQVPAMMKEGICL
VVSPLVALMKDQVANLQKREIKAIALTGGIHTEEIIDLLDNCQFGNYKFLYLSPERLQSD
WILERLKNLPINLIAIDEAHCVSQWGHDFRPAYLKISELKKHFPKIPFLALTATATPRVI
EDIKTELGLKDPILFQQSFERKNIAYMVFEVEDKLYRTEQILKKNPQPSIIYVRNRKSCL
NMSTQLQSLGFKATYYHGGLSAKEKDKNMQLWMSEQAQVIVATNAFGMGIDKDNVKTVIH
TQLPENIENYYQESGRAGRNGEKAFSVVLTNSSDSNQTEQQFLSILPDKKFLNTMYVKLC
NYFQIAYGEGLDDSFSFKLNHFCQKYDFPTLKTYNALQFLNQQGIITMSQEFSEKITMQF
LIESKEVIRYMSLNPNDEEIILAILRTYPGIYEMKMPFNISLIAKKSNHTEAQVSAVLEK
LKEKEIIEYKSKNNDATILFNEVREDNLTINRVAKYLEKQNQLKKDQLLSVLHYIKDNKT
CKNRLILDYFGEETKENCGVCSYCITQKGKITEADSIADKILHLLKSAALTSREIETQIK
LDANDVILALQELLENNYITIQANNKYTLKL
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaagcgcaaaaaattcttttaaaatactggaaacacgacagttttagaccgttg
caaaaggagattattgactcggttttggatggtcaggatacttttgcgctgctcccaacc
ggcggcggaaaatcgatttgttttcaggttccggccatgatgaaagaaggtatttgcctg
gtcgtttctcctctggttgctttgatgaaagatcaggtcgccaatttgcaaaaacgagaa
attaaagcgattgcgcttacaggcggaattcatacggaagaaattatcgatcttctcgac
aattgccaatttggaaattacaaattcttatatctttctccggagcggcttcagtctgac
tggattttagaacgcttaaaaaatcttcctataaatttaattgccattgatgaagcgcat
tgtgtttcgcaatggggacatgattttcgtccggcttatttgaagatttcagaacttaaa
aaacattttccgaagattccatttttggctttaacagcaacggcaactccaagagtgatt
gaagatattaaaacagaattaggattgaaagatccgatactttttcagcaatcttttgaa
agaaaaaatatcgcctacatggtttttgaagtcgaagacaaattgtaccgaacggaacaa
atattaaagaaaaacccgcagccctctattatatatgtacgaaatagaaaatcgtgcctg
aatatgtcgacgcaattacaatctttaggatttaaagcgacgtattatcacggtggcctt
tcggcaaaagaaaaagacaaaaacatgcaattgtggatgtccgaacaagcgcaggtaatt
gttgccacgaatgcgtttggaatgggaatcgacaaagacaatgtaaaaacggttattcat
actcagcttcctgaaaatatagaaaattattatcaggaatccggaagagcgggacgaaat
ggcgaaaaagcattttcggttgttttaaccaattcttcagacagcaatcaaaccgaacag
caatttttaagcattctgccggataaaaaatttctgaatacgatgtatgtcaaactttgc
aattattttcagattgcttatggcgaaggtttagatgattctttttcgtttaaactgaat
catttttgtcagaagtacgacttccctaccttaaaaacatacaatgctttgcagttttta
aatcagcagggaattatcacgatgtctcaggaattctctgaaaaaattacaatgcagttt
ttgattgaatcgaaagaagtaatcagatacatgagtctgaatcctaatgatgaagaaatt
attttggcaatcctgagaacttatcccggaatttacgaaatgaaaatgccgtttaacatt
tcgctcattgcaaaaaaatcaaatcataccgaagcacaagtttctgctgttttagaaaaa
ctaaaagagaaagaaatcatcgaatacaaatctaaaaataacgacgctactatattattt
aatgaagttcgcgaagataatcttaccataaacagagtcgctaaatatctcgaaaaacaa
aatcagcttaaaaaagaccagcttttatctgtactacattatattaaggacaataaaacc
tgcaaaaacagattgattttggattactttggagaagaaaccaaagaaaattgtggcgtt
tgctcttattgcattacacaaaaaggcaaaattaccgaggccgattcgattgcagataaa
attctgcacttattaaaatccgcagctttgacttcgagagaaattgaaacccaaataaaa
cttgatgcaaatgatgtaattttggcacttcaggaattactggagaacaattatattact
attcaggcaaacaataaatacactttaaaattataa
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