Flavobacterium bizetiae: L0669_12310
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Entry
L0669_12310 CDS
T08699
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fbi
Flavobacterium bizetiae
Pathway
fbi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L0669_12310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fbi03019
]
L0669_12310
03009 Ribosome biogenesis [BR:
fbi03009
]
L0669_12310
Enzymes [BR:
fbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L0669_12310
Messenger RNA biogenesis [BR:
fbi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L0669_12310
Ribosome biogenesis [BR:
fbi03009
]
Prokaryotic type
rRNA helicases
L0669_12310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UTN06667
LinkDB
All DBs
Position
complement(2845425..2847332)
Genome browser
AA seq
635 aa
AA seq
DB search
MNKFEQLGLNESLLKAILDLGFENPSEVQEKAIPLLLEKDTDMVALAQTGTGKTAAFGFP
LIQKIDADNKNTQALVLSPTRELCLQITNELKNYSKYEKGINVVAVYGGASITEQARDIK
RGAQIIVATPGRMQDMINRGLVNIKNIDYCILDEADEMLNMGFYEDIVSILSDTPDQKST
WLFSATMPQEVARIAKQFMSEPVEITVGAKNSGSATVSHEFYLVNARDRYEALKRLADAN
PDIFSVVFCRTKRDTQAVAEKLIEDGYSAAALHGDLSQAQRDGVMKSFRGRQIQMLVATD
VAARGIDVDNITHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSELRKISSIERI
IKQKFEEKPIPSGIEICEIQLLHLANKIKDTEVDHEIDNYLPAINNVLEGLSKEELIKKM
VSVEFNRFIAYYKKNRDISTQSGERRERNDSEPREFNNNGAVRYFVNIGSRDNFDWMSLK
DYLKETLDLGRDDVFKVDVKEGFSFFNTDPEHTEKVMEVLNNVQLEGRRINVEISKNDGG
GRRDHNGRSGGGRSSGPRREGSFAPRREGSGSGFRSDRNSAPREGGFRSDRNSSAPKREG
GFRSSAPRSEGGSDRAPRRSESFGDSPRPRRPRRD
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgaataaatttgaacaattaggattgaatgaatcgttactgaaggcgattttagatcta
ggatttgaaaatccgtcagaggtacaggaaaaggcgattcccctattattggaaaaagac
acagatatggttgcgttggctcagacagggacagggaaaacggcagctttcggttttccg
ctaattcaaaaaattgatgctgacaacaaaaatacacaagcattagttttatcgccaaca
cgagaactttgtttacagattaccaacgaacttaaaaactactcaaaatacgagaaaggt
attaatgtggtagcagtttacggcggggctagtattacagagcaagctagagacattaaa
agaggagcacaaattattgtggctactcctgggagaatgcaagacatgatcaacagagga
ttggttaacattaaaaatatagattactgtattcttgatgaggctgacgaaatgctgaac
atgggattttatgaggatatcgtatctattttatcagatactccagatcaaaaaagtaca
tggttgttctctgcaactatgccacaagaggttgccagaattgcaaaacaattcatgagc
gaaccggttgaaattactgttggagctaagaactcaggttctgcaacagtttctcacgaa
ttttacttagtaaatgcacgtgaccgttacgaagctttaaaacgtttagccgatgctaac
ccagacattttctctgtggttttctgtcgtactaaaagagatacacaagctgtagctgaa
aaattaattgaagatggatacagcgctgctgcattgcacggagatttatctcaggcgcaa
cgtgatggtgtaatgaaatctttccgtggaagacaaattcagatgcttgttgctactgac
gttgctgcacgtggtattgatgttgataatattactcacgtagtaaattaccaacttcct
gacgaaattgaaacttacaatcaccgttcaggccgtacaggtagagctggaaaattagga
acttctattgtaattgttacaaaaagtgagttacgtaaaatttcttctatcgaaagaatc
atcaaacaaaaatttgaagaaaaaccaattccatctggaattgagatttgcgaaattcaa
ttgttgcacttagcaaacaaaattaaagatactgaagttgatcacgaaattgacaactat
ttaccagctattaacaatgttcttgaaggtttatctaaagaggaattgattaagaaaatg
gtatctgtagaattcaaccgttttattgcttactacaaaaagaacagagatatttctact
caatctggagaaagacgcgaaagaaatgattctgagccaagagaattcaataataacgga
gcagttcgttactttgtaaacattggttcaagagataatttcgactggatgtctcttaaa
gattacttgaaagaaacattagacttaggtcgtgatgacgttttcaaagtagatgttaaa
gaaggtttctctttctttaacactgatcctgagcacactgaaaaagtaatggaagtatta
aacaacgtacaattagaaggacgtcgtattaatgttgaaatttctaaaaatgatggtggc
ggaagacgtgaccataatggacgtagcggtggaggacgtagttctggaccgagacgtgaa
ggaagttttgctccaagacgtgaaggttctggtagtggattcagaagcgacagaaactct
gctcctagagaaggtggtttcagaagcgacagaaactcatctgctccaaaaagagaaggt
ggttttagaagttcagctccaagaagcgaaggtggttcagacagagctcctagacgttct
gaaagctttggtgattcaccaagaccaagaagaccaagaagagattaa
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