Flavobacterium bizetiae: L0669_12940
Help
Entry
L0669_12940 CDS
T08699
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
fbi
Flavobacterium bizetiae
Brite
KEGG Orthology (KO) [BR:
fbi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
fbi03009
]
L0669_12940 (rlmD)
Enzymes [BR:
fbi01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
L0669_12940 (rlmD)
Ribosome biogenesis [BR:
fbi03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
L0669_12940 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
Cons_hypoth95
MTS
TRAM
TRM5-TYW2_MTfase
Methyltransf_15
PrmA
PCMT
FtsJ
N6_N4_Mtase
Alginate_lyase2
Methyltransf_11
UPF0020
Motif
Other DBs
NCBI-ProteinID:
UTN02223
LinkDB
All DBs
Position
complement(2988213..2989625)
Genome browser
AA seq
470 aa
AA seq
DB search
MGRKNTDKVVFHQIQVLDAGAKGVSVAKAPDGKVIFIPNVVPGDVVDVQTFKKRKAYYEG
KAVKFHELSEHRIEPICDHFGVCGGCKWQNMKYSQQLYYKQNEVKNHLQRIGKVELPEFE
TILGSEKQFFYRNKMEFSFSNARWLTEKEIESTEDLGNRNALGFHIPKMWDKILDIQKCY
LQEDPSNAIRNEIRDFANANNLAFFNPREQSGLLRTFMIRTASTGEIMVLIQFYENDKKN
RELLLDHLYEKFPQITSLQYVVNSKQNDTIYDQDIKLYKGRDYILEEMEGLKFSINAKSF
YQTNSDQAYELYKITRDFAGLSGSETVYDLYTGTGTIAQFVSKKAKKVIGVESVPEAILD
AKANAERNNITNCEFFVGDMKVVFNESFIAEHGKPDVIITDPPRDGMHAAVIDQILKIAP
KKVVYVSCNSATQARDLALMDEKYKVTRVRPVDMFPQTHHVENVVLLELR
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgggaagaaaaaatacagacaaagttgtctttcatcagattcaggttcttgatgccgga
gcaaagggagtatcagtagcaaaggctcctgacggaaaagtaatctttattccgaacgta
gttccgggtgatgttgttgacgttcaaactttcaaaaaaagaaaagcctattatgagggc
aaagccgtaaaatttcatgaattatcagagcatcgtatcgaacctatctgcgatcatttt
ggagtttgtggaggatgcaaatggcaaaatatgaaatacagccaacagttgtattacaaa
caaaacgaagtaaaaaaccatttacagcgtataggaaaagttgaacttcctgagttcgaa
actatcctgggttctgaaaaacagtttttttacagaaataaaatggaattttcgttttct
aacgctcgttggttaaccgaaaaagaaattgaaagcactgaagatcttggaaacagaaat
gcactaggatttcacatcccgaaaatgtgggataaaattcttgacattcaaaaatgttat
ttacaggaagatccttcaaacgcgattagaaacgaaattagagattttgccaatgcaaat
aatttagcgttttttaatccaagagagcaatctggtttattaagaacgtttatgattcgt
acggcttcgacaggagaaatcatggtgttgattcagttttacgaaaacgacaaaaaaaat
cgtgaattgcttttagatcatctttacgagaagttccctcaaattacttcattacaatat
gtggtaaattcaaagcaaaacgatactatttacgatcaggatatcaaactatataaaggt
agagattatatccttgaagaaatggaaggtttaaaatttagcatcaacgctaaatctttt
tatcagaccaattctgaccaggcttacgaattatacaaaataacacgtgatttcgccgga
ctttcaggcagcgaaaccgtttatgatttatatacaggaaccggaactattgcacaattt
gtttctaaaaaagcaaaaaaagtaattggtgtagaaagtgttcccgaagcaattttagat
gctaaagccaatgcagaacgcaataatataacgaattgtgagttttttgtaggtgatatg
aaagttgtttttaacgaaagtttcatcgcagaacatggcaagccggatgttattattaca
gatccgccaagagacggtatgcacgcagcagttatcgatcaaatcctgaaaattgctcct
aaaaaagtagtttatgtaagttgtaactcagcaacacaagcacgtgatttagctttaatg
gatgagaaatataaagttacgcgcgttagaccagttgatatgtttccgcaaacgcatcat
gtcgaaaatgttgtacttttagaacttcgctaa
DBGET
integrated database retrieval system
