Flavobacterium bizetiae: L0669_14070
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Entry
L0669_14070 CDS
T08699
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fbi
Flavobacterium bizetiae
Brite
KEGG Orthology (KO) [BR:
fbi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fbi03016
]
L0669_14070
Enzymes [BR:
fbi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
L0669_14070
Transfer RNA biogenesis [BR:
fbi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
L0669_14070
Prokaryotic type
tRNA splicing ligases
L0669_14070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UTN02447
LinkDB
All DBs
Position
3241531..3242922
Genome browser
AA seq
463 aa
AA seq
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MGNKLSGKDLIKLGFPKNNSINIALGQINRYRKREKKEAILTEAKEVLLHPEKFEGHGTW
GKVAEGLVNPVQVRMHHLKTTRVPFTIFGENEIDQQAKFQLYDSLKLPISVAGALMPDAH
SGYGLPIGGVLATDNAVIPYGVGVDIGCRMSLSIFDLPASHFKGKEHQLQAILKDNTKFG
MNETHSTKADHEVFYKSEFQDIPLLKNLLPKAYKQLGSSGGGNHFVEFGIAKIDNPENEW
KLGVGEYFAVLSHSGSRGLGANIAKHYTYLATKQCPLPKNVQHLAWLDLNTHDGQEYWLA
MNLAGEYAKACHDDIHRRIAKAIGKRVVVTIENHHNFAWKEMVNGQECIVHRKGATPAAE
GQLGIIPGSMTAPGYIVKGKGNAASLNSASHGAGRLFSRAKCKATFTQSEIKKVLKANDV
TLIGGNIDEAPMAYKDITKVMGNQTDLVEVLGTFTPKIVRMDR
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaaataaattatccggaaaagacctgattaaattgggctttccaaaaaataattca
ataaatattgctttagggcaaatcaacagatatagaaaaagagagaaaaaagaagctatt
ctgacagaagcaaaagaggttttgcttcatccggaaaagtttgaaggacatggaacttgg
ggcaaagtagccgaaggattggtaaatccagttcaggtaagaatgcatcatttaaaaaca
acaagagttccttttaccatttttggagaaaatgaaatcgatcagcaagctaagtttcag
ttatatgattctttaaaactgcccatttcagttgccggagctttaatgccagacgcgcat
tcaggttatggattgccaattggtggggtgttggcgacagataatgcggttattccgtat
ggagttggggttgatattggctgccgaatgagtttgtcgattttcgatttacctgcttca
catttcaaaggaaaagaacatcagttgcaggctattttaaaagataataccaaattcgga
atgaacgaaacacattctacaaaggcagatcatgaagttttttacaaaagcgagtttcag
gatattcctttattgaaaaatcttttaccaaaagcctacaaacaattaggaagttcaggt
ggaggaaatcactttgtagaatttggaattgccaaaatcgataatccggagaatgaatgg
aagttgggtgttggtgaatattttgctgttttatcacatagtggttcacgaggtttagga
gcaaatattgcgaaacattatacttatttggccacaaaacaatgtccgctgcctaaaaac
gttcagcatttggcctggttagatctaaatacgcacgatgggcaagaatattggctcgcg
atgaatttagccggagaatacgctaaagcgtgtcacgatgatattcatagaagaattgcc
aaagcaataggaaaaagagtagtggtgacgattgaaaatcaccacaattttgcctggaag
gaaatggtaaatggtcaggaatgtattgtgcatagaaaaggggcaactccggccgcagaa
ggtcaattggggattattccgggatcaatgactgcgccgggatatattgtgaaaggtaaa
ggaaatgcagcaagtttaaactcggcctcgcacggagcgggacgtttgttttcgagagcc
aaatgcaaagctacttttactcaaagtgaaattaaaaaagtgctaaaagcaaatgatgta
accttgattggaggaaatatcgacgaagcaccaatggcgtataaggacattacaaaagta
atgggaaatcaaacggatttggtggaagtgcttggaacttttacgccaaaaatcgttaga
atggaccgataa
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