Flavobacterium bizetiae: L0669_20395
Help
Entry
L0669_20395 CDS
T08699
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fbi
Flavobacterium bizetiae
Pathway
fbi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L0669_20395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fbi03019
]
L0669_20395
Enzymes [BR:
fbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L0669_20395
Messenger RNA biogenesis [BR:
fbi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L0669_20395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DUF2828
ERCC3_RAD25_C
P-loop_SecA
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
UTN03675
LinkDB
All DBs
Position
4956512..4957765
Genome browser
AA seq
417 aa
AA seq
DB search
MLFEDLSLSKSIQKAVFEEGYLNPTPIQEQSIPIVLAGRDLIGCAQTGTGKTAAFAIPII
HQLHRIVGSSKKAKVIRALIVTPTRELAVQIGQSFDTYAKYTNLTQLTIFGGVSQNPQVD
ALKNGVDILVATPGRLLDLQKQGFLDLDHLHTLVLDEADQMLDMGFINDVKKIVKLTPKN
RQTLLFSATMPIAIRELAEMFLQDPAKVEVSPVSSTAENVEQRVYFVEKTEKRNLLYHLI
KNEELSNVLVFSRTKHGADNVVKALRKKDIPAEAIHGDKSQNARQRVLDAFKNKEVGVLV
ATDIAARGIDIDQLPFVINFDLPNIPETYVHRIGRTGRAGNGGVAISFCSKDEHGYWKDI
QKLIKVDVKTITDHPYQWHAGSPEEAAKEKPKNSNRSGGAHKSRKSNASKQNKKRWY
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgttattcgaagatttatcactttcaaaaagtatacaaaaagccgtatttgaagaaggc
tacctaaaccctactcctattcaggaacaatctattccgattgttttggcaggaagggat
ttaattggttgtgcccaaaccggtacaggaaaaactgctgcatttgccatcccaatcata
catcaattacaccgaattgtaggctcatcaaaaaaagcaaaagtaattcgtgctcttata
gtaactccaactcgtgaattagcggttcaaattggacaaagttttgatacttatgccaaa
tatactaacctgactcaattgacgatttttggtggagtatcgcaaaacccgcaagttgac
gcgttgaaaaacggagttgacattttagtcgctacaccaggaagattattagacttgcaa
aaacaaggtttccttgatttagatcacttgcatactttagttttagacgaggccgatcaa
atgctggacatgggttttataaacgatgtaaaaaagatcgtaaaactaacgcctaaaaac
cgtcagactttattattctctgctacaatgccaattgctattcgcgaactagccgaaatg
tttttacaagatcctgcaaaagttgaagtttctccggtttcctcaacagcagaaaatgta
gagcaacgtgtttattttgttgaaaaaacagaaaaaagaaatttactttaccaccttata
aaaaacgaagaattatcgaacgtattggttttctcaagaaccaaacacggagctgataat
gttgtaaaagcattgcgtaaaaaagatattcctgctgaagccattcacggagataaatcg
caaaatgcaagacaacgtgttttagatgcttttaaaaataaagaagttggtgttcttgta
gcaactgatattgcagcaagaggaattgatattgatcaattaccattcgtaatcaacttt
gatttacctaatattcctgaaacttacgtacatagaattggacgtacaggtcgtgccgga
aacggaggagttgcgatttctttttgcagtaaagacgaacacggttactggaaagatatt
cagaaattgataaaagtagatgtaaaaacaattacagatcatccttatcaatggcatgcc
ggaagtcccgaagaagcagcaaaagaaaagcctaaaaactcaaatcgaagcggtggtgct
cataaatcaagaaaatcaaacgcttctaaacaaaataaaaaacgctggtattaa
DBGET
integrated database retrieval system
