Flavobacterium bizetiae: L0669_21600
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Entry
L0669_21600 CDS
T08699
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fbi
Flavobacterium bizetiae
Brite
KEGG Orthology (KO) [BR:
fbi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fbi03016
]
L0669_21600
Enzymes [BR:
fbi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
L0669_21600
Transfer RNA biogenesis [BR:
fbi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
L0669_21600
Prokaryotic type
tRNA splicing ligases
L0669_21600
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Dpy-30
Motif
Other DBs
NCBI-ProteinID:
UTN03907
LinkDB
All DBs
Position
complement(5243718..5245139)
Genome browser
AA seq
473 aa
AA seq
DB search
MKIQINGTDILELGFPEGKIIGIALRINSKRHGLKRDEMIVNFKKVLETPENYIDDKIFS
KLAIALIEKANEKPEDFIALNQNPNAYSAYGLDHIEDGARKQMEVAMKLPVTVAGALMPD
AHQGYGLPIGGVLATKNAIIPYGVGVDIGCRMALSVYDIPEAFYFENEAKFKKELIANSI
FGAGHGFHGQYKSDHAVLENDAFNMTPFVKNLKDKAWSQLGSSGGGNHFVEFGIMEFAKD
DAVLNIPKGKYVALLTHSGSRGMGATIAGHYTKMAKDVCKLPEVAKNLAYLDMNSQLGQE
YWLAMNLAGDYASACHEIIHNKMERALGATILAKVENHHNFAWKEIWNGEEVIVHRKGAT
PAGKGVMGIIPGSMTAPGFLVRGKGEENAINSASHGAGRQMSRTQAIKNITPTEMKSILR
DHGVTLIGAGLDEAPMAYKDINQVMEAQQDLVDVVAKFTPKLVRMADDGSRED
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatacaaataaacggtacagatatattagaattaggatttccagaaggaaaaata
attgggattgccttaagaataaacagcaaaagacacgggttaaaacgtgatgaaatgata
gtcaatttcaaaaaagtcttagaaactccggagaattatatcgacgataaaatcttcagc
aaactggcaattgccttgatcgaaaaagcaaatgaaaaaccagaagatttcatcgcttta
aatcaaaatccgaatgcgtattcggcttacggattagatcatatcgaagacggagccaga
aaacaaatggaagtggccatgaaattacctgttaccgttgctggagctttaatgccggat
gcgcaccaaggttacggattaccaattggaggagttttagccacaaaaaatgccattatt
ccgtatggtgttggagttgatattgggtgtagaatggcgttgtcggtttatgatattccg
gaagctttttattttgaaaacgaagccaaattcaaaaaagaattaattgccaattctatt
tttggagcaggtcacggatttcacggtcagtacaaatcagatcatgcggttttggagaac
gatgcttttaatatgactccttttgtcaagaacttaaaagataaagcctggtcgcaatta
ggatcttcaggtggcggaaatcactttgtggaattcggaatcatggaatttgcaaaagac
gatgcggttttgaatattccaaaaggaaaatacgtcgctttgttaacgcattccggttca
cgcggaatgggagcaaccattgccggacattatactaaaatggcaaaagacgtttgtaaa
cttccggaagtggccaaaaacttagcgtatttagatatgaactcacaattgggacaagaa
tattggctggcgatgaatttggcgggagattacgcttcggcttgtcacgagattatccat
aacaaaatggaacgtgctctgggcgcgacgattttagcgaaagtcgaaaaccatcataat
ttcgcctggaaagaaatctggaacggcgaagaagtgatcgtacatagaaaaggagcaact
ccagccggaaaaggcgttatgggaatcattccaggaagcatgaccgcgccgggatttttg
gtgagaggaaaaggcgaagagaacgccattaattcggcttcgcatggagcaggaagacaa
atgagcagaacccaagccataaaaaacatcacaccaaccgagatgaaatcgatactgaga
gatcatggcgttacgcttatcggtgcgggtctggacgaagccccaatggcgtataaagat
atcaatcaggtgatggaagcgcaacaggatttagttgatgttgtagcgaagtttacacca
aaattagtgagaatggcagatgatgggagtcgtgaggattag
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