Ferrimonas balearica: Fbal_2512
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Entry
Fbal_2512 CDS
T01318
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fbl
Ferrimonas balearica
Pathway
fbl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fbl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Fbal_2512
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fbl03400
]
Fbal_2512
Enzymes [BR:
fbl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Fbal_2512
DNA repair and recombination proteins [BR:
fbl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Fbal_2512
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ADN76714
UniProt:
E1SNP1
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All DBs
Position
2799046..2802516
Genome browser
AA seq
1156 aa
AA seq
DB search
MSRFSPLEPPAGGPHSKLRLTGLVGSAKSLAINTMARRHSGLTLLLTHDTPTALRLEQEL
AYLCRDDLPVLLFPDRETLPYDSFSPHQDIVSQRLEALHALPGLKRGLVILPVPTALTRV
CPPAFVAGKVVRFEQGQTLDIEKLRQDLTQAGYHHVDQVREHGEYAIRGAIVDLFPMGSD
TPLRLDLFDDELESIRPFDPDTQRSEGTLPSISLLPAREFPTDAAGIDSFRAHYRQRFER
ISNEAESVYQQVSKGILPGGVENYLPLFFDQTATVFDFLPNDTQMLTVGPIQDACERYLS
DAEARYENQRVDPLRPLLAPHELFLRNEELFSEIKQRGRIQLEAGVSEIAREPRADVDDV
QEIEINHLLKTPLAPLLSYLENVPRVLFSVESEGRREALLELLRPAGLKPEPCDHIDDFL
ASNCPMGLVVSPLERSVMLRREGIALICEEELLGGRVRQSRRSRQRRSVSSESLIRNLAE
LKVGQPVVHLKHGIGRYLGLETLEAGGLESEFLMLEYGGGSKLYVPVNALHMISRYSGAD
EESVTLNKLGSEAWDKARRKAAEKVRDVAAELLDIYARREAKPGHGFPMDELEYQRFSAA
FPFEETVDQAAAIGAVLRDMTKPQAMDRLVCGDVGFGKTEVAMRAAFVAVNGGKQVAVLV
PTTLLAQQHYENFRDRFADWPVRVEVMSRFRTASEQKKVLEQLAEGKVDILIGTHKLLQS
EINFPDLGLLIVDEEHRFGVRQKEKIKALRAEVDILTLTATPIPRTLNMAMSGMRDLSII
ATAPKRRLSVKTFVRPQEGALVREALMREILRGGQVYYLHNSVETIQECADELAKLVPEA
RVGIAHGQMRERELEQVMSDFHHGRFNLLVCTTIIETGIDIPSANTILIERADKFGLAQL
HQLRGRVGRSHHQAYAYLLTPAKKLAKDAAKRLEAIEQLDDLGAGFLLATQDLEIRGAGE
LLGDEQSGHISKIGFSLYMEMLEQTVNALKSGQEPSLDQILSDQAELELRIPALLPESYL
PHVNTRLAIYKQIASCNSDDDLLQAKVELVDRFGRLPEAAENLLAVTRLKLRATTLGIRR
IEAHAKGGSFEFTEHTPVQAQTLIALLQSNVGKLKMDGPTKLRFMDDIEAPQARLDAVTE
WLDRLSVDLKQEATLS
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgtttttcccctcttgagccgccagcgggcggtcctcacagcaagttacgcctg
accggactggtgggctcagcgaaatcgctggccatcaataccatggcgcgccgtcacagc
ggactgacactgctgctgacccacgacacgccaaccgcattgcgcctggagcaggagctg
gcctatctgtgccgcgacgatctgccggtgctgctgttcccggaccgcgaaaccctgccc
tacgacagcttttcgccccatcaggacatcgtgtcccagcgcctcgaagcgttgcatgcc
ctgcccggcctcaagcgtggcctggtgatccttccggtgcccaccgccctgacccgggtc
tgcccgcccgcctttgtggccggcaaagtggtgcgattcgagcaaggccagacgctggat
atcgagaagctgcgacaggatctgacgcaggccggctaccaccacgtcgaccaggtccgc
gaacatggcgagtacgccattcgcggcgccattgttgacctgttccccatgggcagcgat
acgccgctgcgactggacctgtttgacgacgaactggaaagcatccgcccctttgacccg
gatacccagcgctccgagggcaccctgccctcaatcagcctgctgccggcccgggagttc
cccaccgacgcggcgggcatcgacagcttccgcgcccactatcgtcaacgctttgagcgc
atcagtaacgaagcggagtcggtctatcagcaggtgtccaaagggatcctgcccggcggg
gtagaaaactacctgccgctgttcttcgaccagaccgccaccgtgttcgactttctgccc
aacgacacccagatgctgacggtcgggccgattcaggacgcctgcgaacgctacctgagc
gacgccgaagcgcgctacgaaaaccagcgggttgaccccctgcgtccactgctggctccc
cacgagctgttcctgcgcaacgaagagctgttcagcgagatcaaacagcgtggccgcatc
cagctcgaagctggcgtctccgagatcgcccgcgaacctcgcgccgatgtggacgacgtg
caggagattgagatcaaccacctgctgaaaacgcccctggcaccgctgctcagttatctg
gaaaacgtgccacgggtgttgttctcggtggaatccgaaggtcgccgcgaagcgctgctg
gaactgctgcgtccggcggggctgaagccggaaccttgcgaccatatcgacgacttcctc
gccagcaactgcccgatgggtctggtggtcagcccgcttgagcgctcagtgatgctgcgc
cgggaggggatcgccctcatctgtgaagaggagttgcttggtggtcgggtgcggcaaagc
cgccgcagccgacagcgccgcagcgtcagctccgaatccctgatccgcaatctggctgag
ctgaaagtgggccagccggtggtgcaccttaaacacggcatcgggcgctacctcggcctg
gaaaccctggaagccggtgggctcgaatccgagttcctgatgctggaatacggtggcggc
tccaagctctatgtgccggttaacgcgctgcacatgatcagccgctacagcggtgccgac
gaagagagcgtcaccctcaacaagctgggctctgaagcctgggacaaggcccgtcgcaaa
gccgccgagaaggtgcgtgatgtggccgcggagttgctggacatctatgcccgccgtgag
gccaaaccgggccacggtttccccatggacgagctggagtaccagcgcttcagcgcggcc
ttcccgtttgaggaaaccgttgatcaggctgccgccatcggcgccgtactgcgggatatg
accaagccccaggccatggaccgtctggtctgcggtgacgtgggctttggtaaaaccgag
gtggcgatgcgcgcggcgtttgttgccgtcaatggcggcaagcaggtggcggtgttggtg
cccactaccctgttggcccagcagcactacgagaacttccgtgatcgctttgccgattgg
ccggtgcgggttgaggtgatgagccgattccgcaccgccagcgagcagaaaaaggtgctg
gagcaactggccgaaggcaaagtcgacatcctgatcggcacccataagctgctgcagagc
gagatcaacttccccgacctgggcctgctgatcgtcgacgaagagcaccgctttggcgtg
cggcagaaggagaagatcaaggcgctgcgggccgaggtggacattctcaccctgaccgcc
acgcccatcccgcgtaccctcaatatggcgatgtccggcatgcgcgacctctccatcatc
gccaccgcccccaaacgccgcctgtcggtgaaaacctttgtccgcccccaggagggcgcg
ctggtgcgggaagcgctgatgcgggagatcctccgcggtggccaggtgtactacctgcac
aacagcgtggagacgattcaggagtgcgccgacgaactggccaaactggtaccggaagcg
cgggtgggcattgcccacggccagatgcgtgagcgcgagctggagcaggtgatgagcgac
ttccaccacggtcgtttcaatctgctggtctgcaccaccatcatcgaaaccggcatcgac
attcccagcgccaacaccatcctgattgagcgggcggataaattcggcctggcccagctg
caccagctgcgcggccgggtgggtcgttcccaccaccaggcttacgcctacctgctgacc
ccggccaagaagctggccaaagacgcggccaagcgactggaggcgattgagcaactggat
gatctgggtgccggcttcctgttggccacccaggacctcgagatccggggcgccggcgaa
ctgctcggcgatgagcagagcggccacatcagcaagatcggcttcagcctctatatggag
atgctggagcaaaccgtcaatgccctgaaatccggtcaggagccgtcgctcgaccagatc
ctgtcggaccaggcggaactggagctgcgcatcccggccctgctgccggagtcctacctg
ccccacgtcaacacccgcctggccatctacaagcagatcgcgtcctgcaacagtgacgat
gacctgctgcaagccaaggtggaactggtggaccgatttggtcgactgccggaagcggcg
gaaaacctgttggcggttacccgcctgaaactgcgcgccaccacgctggggatccggcga
attgaggctcacgccaagggcggcagcttcgaattcaccgaacataccccggttcaggca
caaaccctgatagcactgctgcaatcgaacgtcggtaagcttaagatggacgggccgacc
aaactgcggtttatggacgatatcgaggcgccccaggctcgtctggacgccgtcaccgag
tggcttgaccgcctctcggtggatctcaaacaagaggccacgctttcgtga
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