Ferrimonas balearica: Fbal_3563
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Entry
Fbal_3563 CDS
T01318
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
fbl
Ferrimonas balearica
Pathway
fbl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fbl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Fbal_3563
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fbl03019
]
Fbal_3563
Enzymes [BR:
fbl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Fbal_3563
Messenger RNA biogenesis [BR:
fbl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Fbal_3563
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADN77759
UniProt:
E1SNV2
LinkDB
All DBs
Position
complement(4018945..4020228)
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AA seq
427 aa
AA seq
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MTKTHLTETKFADFPLAPQVVEALESSGFTHCTPIQALTLPIVLSGKDIAGQAQTGTGKT
LAFLVATFHELLKQPAPEGHDGKSPRALIMAPTRELAIQIFKDAEPLSEATGLKLGLAYG
GEGYDSQRATLEAGVDILIGTTGRLIDYYKQGTYKLNGIQVMVLDEADRMFDLGFIKDIR
YLFRRMPAPAERRNMLFSATLSFKVQELAYEHMNEPEHVQVEPEQKTGKRIKEELFYPSN
DDKMRLLLTLIEEDWPDKAIIFANTKHRCEDIWAWMAGDGHRVGLLTGDVPQKKRVKILE
QFKAGEVDFLVATDVAARGLHIADVTHVFNYDLPDDAEDYVHRIGRTGRAGATGHSISFA
CEQYALNLPAIEEYIGHQIPVSSYDATALLTDIPRPQRIQRNRRPGGRDGQRRDGRSGGG
RGPRPRR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgactaagacccatcttaccgaaaccaaattcgccgattttccgctggctccccaagtg
gttgaagccctggaatcgagtggatttacccactgcacgccgattcaggcgctgaccctg
cctatcgtcttgtccggtaaggacattgcgggtcaagcccagaccggtaccggcaaaact
ctggcgttcctggtcgccaccttccacgagctgctgaagcagcccgccccggaaggtcac
gatggtaagagcccccgcgcccttatcatggccccgacccgggaactggccatccagatc
tttaaggacgcggaaccgctgtccgaggccaccggcctgaagctgggtctggcctatggc
ggcgaaggctacgacagccagcgcgccaccctggaggcgggcgtcgatatccttatcggc
accaccggtcgcctgatcgactactacaagcagggcacctacaagcttaacggcatccag
gtgatggtgctggatgaagccgatcgcatgttcgatctgggctttatcaaagacatccgc
tacctgttccgtcgtatgccggccccggctgagcgtcgtaacatgctgttctccgccacc
ctctcctttaaggtgcaggagctggcctacgagcacatgaacgagccggagcacgtgcag
gtggagccggagcagaaaaccggtaagcgcatcaaggaggagctgttctacccctccaac
gatgacaagatgcgtctgctgctgaccctgattgaggaagattggccggacaaggcgatc
atcttcgccaacaccaagcaccgttgtgaagacatctgggcctggatggcgggcgatggc
caccgcgtgggcctgctgaccggtgacgtaccgcagaagaagcgggtcaagatcctggag
cagttcaaagccggtgaagtcgacttcctggtggccaccgacgtggcagcccgtggtctg
cacatcgctgacgtgacccacgtattcaactacgacctgccggacgatgccgaagactac
gtacaccgcatcggtcgtaccggtcgtgcgggcgctaccgggcactccatcagctttgcc
tgtgagcagtacgctctgaacctgccggccatcgaagagtacattggccatcagatcccg
gtgagcagctacgatgccaccgctctgctgactgacattccgcgtccgcaacgcatccag
cgcaaccgccgtccgggtggtcgcgatggtcagcgacgcgacggccgtagtggcggcgga
cggggcccgcggccccggcgataa
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