Abyssalbus ytuae: MQE35_08225
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Entry
MQE35_08225 CDS
T08292
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
fbm
Abyssalbus ytuae
Pathway
fbm03410
Base excision repair
fbm03430
Mismatch repair
fbm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fbm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MQE35_08225 (recJ)
03430 Mismatch repair
MQE35_08225 (recJ)
03440 Homologous recombination
MQE35_08225 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fbm03400
]
MQE35_08225 (recJ)
DNA repair and recombination proteins [BR:
fbm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
MQE35_08225 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
MQE35_08225 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MQE35_08225 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Toprim
Motif
Other DBs
NCBI-ProteinID:
UOB19272
UniProt:
A0A9E7CV19
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Position
complement(1959659..1961344)
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AA seq
561 aa
AA seq
DB search
MRWTIKPKPNRQDIDCLMRELNVDEIIATLLIQRGVKNFEEAKMFFRPSLTHLHDPFLMK
DMDKAVERIEHAIKQGENILIYGDYDVDGTTAVSLMYSYFLSFYPNVATYIPDRYEEGYG
ISFQGIDFAHDNEFSLIIALDCGIKAVDKVLYAKEKGIDFIICDHHRPGKNIPEAIAVLD
PKQDDCSYPYDELCGCGVGFKLIQALSAKNGQTIEDLIPYLDLVATAIASDIVPITGENR
ILAFYGLQVINSQPRTGIAAITKPLKKKLTITDVVFIIAPRINAAGRMKHGQHAVRLLTE
TNVNTAVKFAEEIEEFNSDRKNLDQLITNEALQQILDNKEEEKYTTVVYNQKWHKGVIGI
VASRLTETYYRPTLVFTKSGEKLAASARSVKGFDVYNAIEACADVIEQFGGHKYAAGLTL
REEKYEDFKQKFEAVVSSSIDKNLLTPEVMIDAEIDFEQITPRLYRILKQFAPFGPGNMT
PVFMTNNLHDTGYGRGVGEGEKHLKVTVIHNLSNPIGGIGFNLGNKLPLVKDKKPFSAVY
TLEENEWNGNVSLQLKIKDIR
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgcggtggaccataaaaccaaaaccaaaccggcaggatatagattgtttaatgagggaa
ttgaatgttgatgaaattattgctacgctcttgatacagcgtggggttaaaaattttgag
gaagcaaaaatgttcttccggccttcattaacacatcttcatgatccctttttaatgaaa
gatatggataaggctgttgaaaggatagaacatgcaataaaacagggagaaaacattctt
atttacggagattatgatgtagatggtactacagcagtttcgttaatgtactcctatttc
ttgtctttttatcctaatgtagcaacttatattcccgacaggtatgaagagggttatgga
atttcgtttcagggaattgattttgcccatgataatgaattttcattgattattgctctc
gattgtggtataaaagctgtagataaggtgctttatgccaaagaaaaagggatagatttt
attatttgtgatcatcacaggccgggaaaaaatattccggaagccattgcagttttagac
ccaaaacaggatgattgtagttatccttatgatgaattatgtggctgtggcgtgggattt
aaactcattcaggcattatctgccaaaaacggacaaaccattgaagaccttattccctat
ttggatttagtggcaacagctattgcttcggatatagtacctataacaggagaaaaccgc
atattggcattttacggattacaagttattaattcgcaaccgcggacaggaatagcggca
ataaccaaaccacttaaaaaaaaattaactattactgatgtagttttcattattgcacca
agaattaatgctgccggcagaatgaaacacggccaacatgctgttagattacttacagaa
actaatgtgaacactgccgttaaatttgctgaagaaattgaagaatttaacagtgaccgg
aaaaatcttgaccagcttattactaatgaagctttacaacaaattctcgacaataaggaa
gaagaaaaatataccactgtggtttataaccaaaagtggcataaaggggtaatagggatt
gtagcctcaagattaaccgaaacttattaccggccaacactggtatttactaaaagcggt
gaaaaactggctgcctcggcacgatctgttaaaggatttgatgtttacaatgctattgaa
gcttgtgcagatgttattgaacaatttggagggcataagtatgcagccggtttaaccctg
cgggaggaaaagtatgaagattttaaacaaaaatttgaagcagtagtttcttcttccatt
gataaaaatcttttaaccccggaagtgatgattgatgctgaaattgattttgaacaaata
acgcccaggctttatcggatattaaaacaatttgctccttttggcccgggcaatatgact
cctgtttttatgacgaataatttacacgataccggatatggcagaggagtgggcgaagga
gaaaaacaccttaaagtaacagttatccataacttgtcaaatcctattggaggaattgga
ttcaatttaggaaataaattgcccctggtaaaagataaaaaaccgttttcggcggtttat
actctagaagaaaatgagtggaacggaaatgtttccttacagttaaaaattaaagatatc
aggtaa
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