Abyssalbus ytuae: MQE35_14185
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Entry
MQE35_14185 CDS
T08292
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fbm
Abyssalbus ytuae
Pathway
fbm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fbm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MQE35_14185 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fbm03021
]
MQE35_14185 (rpoC)
03400 DNA repair and recombination proteins [BR:
fbm03400
]
MQE35_14185 (rpoC)
Enzymes [BR:
fbm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MQE35_14185 (rpoC)
Transcription machinery [BR:
fbm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MQE35_14185 (rpoC)
DNA repair and recombination proteins [BR:
fbm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MQE35_14185 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BSH_YknX
BSH_RND
BSH_RND_rel
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
UOB16876
UniProt:
A0A9E6ZUB8
LinkDB
All DBs
Position
3372379..3376677
Genome browser
AA seq
1432 aa
AA seq
DB search
MAKNKDKNTVQRFNKISIGLASPESVLAESRGEVLKPETINYRTHKPERDGLFCERIFGP
VKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPVAHIWYFRSLPNKI
GYLLGLPSKKLDMIIYYERYVVIQPGNAKNAEGEPLQKLDFLTEEEYLNILESLPVENQY
LEDTDPEKFVAKMGAECLIDLLARLDLDVLSYELRHKANNETSKQRKTEALKRLQVVEAF
REAALNRENKPEWMIMKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLM
EIKAPEVILRNEKRMLQESVDSLFDNTRKSSAVKTESNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPEMKLYECGLPKDMAAELYKPFVIRKLIERGIVKTVKSAKKIIDK
REPVVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDG
DQMAVHLPLGPEAILEAQLLMLASHNILNPANGSPITVPSQDMVLGLYYMTKGRKSTEDH
PILGEGLTFYSPEEVTIAYNEKRVNLNAIIKVKTKDFNEKGELVNQLIETTVGRVLFNEV
VPEKAGYINEVLTKKSLRDIIGKILKATDVPTTSDFLDKIKDMGYKFAFQGGLSFSLGDI
IIPAEKHKMIEEANSQVDGIMMNYNMGLITNNERYNQVIDIWTSTNASLTELAMKRIRED
QQGFNSVFMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIVNTVDCGTLRGIEVEALKKNE
EIVESLGERILGRVSLHDVYNPLTEEILVKSGEEITEAIVKKIEEAPIEKVEVRSPLTCE
AKQGICAKCYGRNLATGKMVQRGEAVGVVAAQSIGEPGTQLTLRTFHVGGIAGNISEENK
IIAKFSSKVEIEDLKIVRGENAEGNPVDIVISRTTEVKFVDEKSGITLATNNVPYGSHIF
VKDGQKVNKGDAICQWDPYNAVIISEFAGKIVYENIEQGVTYQVEIDEQTGFQEKVISES
RNKKLIPTLAIKDAKGVTLRSYNLPVGAHIMVDDGDKIKEGKVLVKIPRKSAKAGDITGG
LPRVTELFEARNPSNPAVVSEIDGVVSFGKIKRGNREIIVESKTGDIKKYLVKLSNQILV
QENDYVRAGMPLSDGSITPEDILRIKGPSAVQQYLVNEVQEVYRLQGVKINDKHFEVVVR
QMMRKVEIIDSGDTTFLEQQLVHKDDFIEENDRVFGMKVIEDAGASDTLKPGQIVTPRQL
RDENSILKRADKQLVIARDAVPAVATPILQGITRASLQTKSFISAASFQETTKVLNEAAV
NGKVDTLEGLKENVIVGHKIPAGTGLREYDHFIVGSKEEYNEIMTRKERINF
NT seq
4299 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaaataaagataagaatacagtacagagatttaataaaatctcaatagggtta
gcatctcccgaatctgttttggcagagtcaagaggcgaagttttaaaacccgaaacaata
aattaccgtactcataaacctgaacgtgatggccttttctgtgaacgtatttttggtccg
gtaaaagactatgagtgtgcctgcggtaaatataaaagaatcaggtataagggtattgtt
tgcgaccgttgtggggttgaagtaactgagaaaaaagttcgtagagacagagtaggacat
attaacctcgttgtaccggtcgcccatatttggtatttccggtcattgcccaataaaata
ggttatttattaggattaccttctaaaaagctggatatgataatttactatgaaaggtat
gtagtaattcagcctggtaatgctaaaaatgctgagggagaaccacttcaaaaattagat
tttttaactgaagaagaatatttaaatatattagaaagccttccggttgaaaatcagtat
ttagaagatacggatcctgaaaagttcgttgctaaaatgggagcagaatgtttaattgac
ctgctggcaagattagatttagatgtgctttcatatgaacttaggcataaagcaaataat
gaaacttcaaaacaacgtaaaactgaagctctaaaacgtttacaggtagtcgaagctttc
cgtgaagcagctttaaacagggaaaataaaccggaatggatgatcatgaaggtcattcct
gttattccaccggaattaaggcctcttgttccccttgacggcgggcgttttgcaacttca
gatttaaatgatttatatagaagggtcataataagaaacaaccgtcttaagagattgatg
gaaattaaagctcctgaggtaattctgagaaatgagaagcgtatgcttcaggaatcggtt
gattcgttatttgataatacccgtaaatcttctgcggttaaaacagaatcaaacaggccg
ttaaaatcattatcagattcattaaaaggaaaacaaggccgtttccgtcaaaacttacta
ggtaaacgtgttgattattctgcacgttcggtaattgttgttggtcctgaaatgaaactt
tatgaatgcggacttccaaaagatatggcagccgagctttacaaaccttttgttattaga
aaattaatagaaagaggtattgtaaaaacagttaaatctgctaaaaaaattattgataaa
agagagccggtagtatgggatattcttgaaaatgtacttaaaggacatccggtactgctc
aaccgtgctcccacacttcaccgtttaggtattcaggcatttcaacctaaattaattgag
ggaaaagcaattcagttacaccccttggtatgtacagcctttaatgccgattttgatggt
gaccagatggcagttcacttaccgcttggaccggaagctatattagaggcacaattatta
atgttggcttctcataacatattgaaccctgcaaacgggtcgcctattaccgtaccttcc
caggacatggttttaggactttattatatgacaaaaggtagaaagtcgactgaagaccat
cctatattaggtgaagggttaacattctattctcctgaagaagttaccatagcttacaat
gagaagagagttaatcttaacgctatcattaaagtaaaaaccaaagatttcaacgaaaaa
ggagaattagttaaccagttaatagaaactacggttggtagagtacttttcaatgaagtt
gtacccgaaaaggcaggatatattaatgaagtgttgaccaaaaaatcacttcgtgatatt
attggaaaaatacttaaagccactgatgttcctactacatccgatttccttgataaaatc
aaggatatgggatataaatttgcattccagggaggtttgtctttcagtctgggagatatt
attattcctgctgaaaagcacaaaatgattgaagaagccaatagccaggtagatgggatt
atgatgaattataacatggggcttatcactaataatgaaagatacaaccaggttattgat
atatggacctccactaatgccagcttaacagaattggcaatgaagcgtatcagggaagat
cagcaaggatttaactcggttttcatgatgcttgattccggggcgaggggttctaaagag
caaatacgtcagcttaccggtatgcgtggtttaatggcaaaaccaaaaaaatcaacagcc
ggtggaggtgaaattattgaaaaccctattctttcaaactttaaagaaggtttatcaatc
ttggaatactttatttcaactcacggtgctcgtaaaggtcttgcggataccgctcttaaa
actgctgatgcagggtacttaacccgtcgtttggtagatgtttcacaagatgttattgta
aatactgttgattgtggtactttaagaggtatagaagttgaagcattaaagaaaaatgaa
gaaatagttgaatctttaggagaaagaattctgggacgtgtttctttacatgatgtgtac
aatcctttaaccgaagaaatactggttaaatcaggtgaagagattacagaagctattgtt
aagaaaatagaagaagctcctattgagaaagttgaagtacgttcgccattaacatgtgaa
gctaaacaaggtatttgtgctaagtgttacggacgaaaccttgcaaccggtaaaatggta
caaagaggtgaagcagtaggtgttgttgctgcccagtctattggagagcccggtactcag
cttacattacgtactttccacgtgggaggtattgcaggtaatatttcggaagaaaataaa
atcatcgcgaagtttagcagtaaagtagaaattgaagaccttaaaatagtaagaggagaa
aatgctgaaggaaaccccgtagatatagttatttcaagaactaccgaagttaagtttgta
gatgagaaatcaggtattactttagcaactaataatgttccttacggttcacatattttt
gttaaagatggccaaaaagttaataaaggtgatgctatttgtcaatgggatccttataat
gcggtaattatatctgagtttgcaggtaaaattgtttatgaaaatattgagcagggtgtt
acttaccaggttgagatagatgaacaaacaggtttccaggaaaaagttatttctgaatca
cgaaacaaaaagcttattcctactttggcaattaaagatgcaaaaggggtaaccttacgt
tcatataacttacctgttggtgcacacataatggtagatgatggtgataagattaaagaa
gggaaagtacttgtaaaaatacctcgtaaatcggcaaaagccggagatattaccggaggt
ttaccacgggtaacagaattgtttgaagcccgtaacccatctaaccctgcagtagtttca
gaaattgacggtgtagtatcctttggtaaaattaaaagaggtaaccgcgaaattattgta
gagtctaaaacaggagatattaagaaatacctcgtaaaactgtctaatcaaattcttgtc
caggaaaatgactatgtaagggcaggtatgccattgtctgatggttctataacacctgaa
gatattcttagaattaaggggccttcagcggtacagcaatacctcgttaatgaagttcag
gaagtataccgtttacagggggtgaaaattaacgataagcattttgaagtagtagttagg
caaatgatgagaaaagtagaaattatcgattccggtgatactactttcttagagcaacaa
ttagttcataaagatgatttcattgaagaaaatgacagggtttttggaatgaaagttatt
gaagatgctggtgcttcagacaccttgaaaccaggacaaattgttacgcctcgccaatta
agggatgaaaattcaattcttaaaagagccgataagcaacttgtaatagcaagagatgcg
gttccggcggtggcaactcctatacttcaaggtattaccagggcttcattgcagaccaaa
tcatttatctcggcagcatcattccaggaaacaacaaaagttcttaatgaagcagctgta
aatggtaaggttgatactctggaaggattaaaagaaaatgttattgttggacataaaatt
cctgctggtacaggtttaagagaatatgatcattttattgtgggctcaaaagaggaatac
aatgaaatcatgactcgtaaagaaaggattaatttttaa
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