Abyssalbus ytuae: MQE35_15680
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Entry
MQE35_15680 CDS
T08292
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fbm
Abyssalbus ytuae
Pathway
fbm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fbm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MQE35_15680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fbm03019
]
MQE35_15680
03009 Ribosome biogenesis [BR:
fbm03009
]
MQE35_15680
Enzymes [BR:
fbm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MQE35_15680
Messenger RNA biogenesis [BR:
fbm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MQE35_15680
Ribosome biogenesis [BR:
fbm03009
]
Prokaryotic type
rRNA helicases
MQE35_15680
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Pox_RNA_pol_35
Cas3-like_C_2
SBF_like
DUF3666
Motif
Other DBs
NCBI-ProteinID:
UOB17168
UniProt:
A0A9E7D1J4
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All DBs
Position
complement(3756055..3757797)
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AA seq
580 aa
AA seq
DB search
MNKFKELGLNEQLLNAIKDMGFETPSEVQEEAIPVLLANDTDLVALAQTGTGKTAAFGFP
LIQKIYPDSRTTQGLILSPTRELCLQIANELKNYAKYVKGLNIVAIYGGASITEQASQIK
KGAQIVVATPGRMQDMINRKMVDISKIEYCILDEADEMLNMGFYEDINSILSHTPEEKFT
WLFSATMPKEVARIAKQFMHTPMEITVGTKNSGSENVQHEYYVVSGRERYLALKRLADAN
PDIFSVVFCRTKRDTQNVAEKLIEDGYNAAALHGDLSQNQRDMVMKAFRTNQIQMLVATD
VAARGIDVDDVTHVINYQLPDEIETYNHRSGRTGRAGKSGISMVIVTKSEMRKISAIERI
IKKKFEAKKIPNAEEICEIQLYHLASKIKNTEINEEINDFLPAVNDVLKGIDRDDLIKKM
VSVEFSRFANYYKNAKDLNAESSNSSNSFSASEGTVRYFINVGERDGYDWRTLKDFLKET
MNFGRDDIFKVDVKESFSFFNTDANHTEAILATFSEFKMDGRYINVEISKNARENSNRGR
NGKDRKRRSDRKRNTKNFKTEGKFGSKKGNSSRKKNKRNF
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgaataaatttaaagaattaggactgaacgaacagctgttaaatgccatcaaagacatg
ggctttgaaacaccttcggaggtacaggaagaagctattccggtcctattagccaatgat
accgacctggttgcgttggcacagacaggaacaggtaaaacagctgcgttcgggtttccg
ttaattcaaaaaatatatcccgacagccggactacacaagggcttatattatcgcccaca
cgtgagctgtgtttacaaattgccaacgagttaaaaaattatgctaaatatgtaaaaggc
cttaatatagtggctatttacggaggtgcaagcataaccgagcaggcaagccagataaaa
aaaggagcccagattgtggtggctacacccggacgaatgcaggacatgattaacaggaaa
atggttgatatttccaaaattgaatactgcattcttgatgaagccgatgaaatgttaaat
atgggattttatgaagatatcaactccatactatctcatacccccgaagagaagtttacc
tggcttttttcggctacaatgcccaaggaagtggccagaatagccaaacaatttatgcac
acccccatggaaataaccgtagggacaaaaaattcgggatccgaaaacgtgcaacacgaa
tattacgtagtgagcggaagggagcgttaccttgctcttaaacgtcttgctgatgccaat
cctgatattttttcagttgttttttgccgtacaaaacgcgacacccagaatgttgcagaa
aaattaattgaagacggatataacgcagcagctttacatggcgacctcagccagaaccag
cgcgatatggttatgaaagccttcaggaccaatcaaattcaaatgctcgttgcaaccgat
gtggcagcaagaggaattgatgtggacgatgtaactcacgtgatcaattatcagcttccc
gacgaaattgaaacttataaccacaggagcgggagaacaggaagagccggtaaatcagga
atttctatggtaatagtaaccaaaagcgaaatgagaaaaatttcggccatagaaagaatt
ataaaaaagaaattcgaagcaaagaagatccctaatgccgaagaaatttgtgaaattcag
ctttatcatctggccagcaaaataaaaaatactgaaattaacgaagaaataaacgatttt
ttacctgccgtaaatgatgtgttaaaaggaattgacagggacgatcttatcaaaaaaatg
gtttcggtagagttcagccgttttgcaaactattacaaaaatgcaaaagatctgaacgct
gaaagttccaactcttctaatagtttctcagcttcagaaggtaccgttcgctatttcatt
aatgtaggagaaagagacggatatgactggagaaccttaaaagattttctgaaggaaacc
atgaattttggcagggatgacatttttaaagttgacgtaaaagaaagtttttcttttttc
aataccgatgctaaccatactgaagcaatacttgctactttttccgaatttaagatggac
ggacgttatataaatgtcgaaatctcaaaaaatgcccgggaaaacagtaacaggggtcgc
aatggcaaggacagaaaaagaagaagtgacagaaaaagaaataccaaaaactttaaaacc
gaaggtaaattcggttctaaaaaaggtaattcttccaggaagaaaaataaaagaaatttt
taa
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