Candidatus Falkowbacteria bacterium NC_groundwater_1683_Pr3_B-0.1um_40_26: HY931_03560
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Entry
HY931_03560 CDS
T10142
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
fbn Candidatus Falkowbacteria bacterium NC_groundwater_1683_Pr3_B-0.1um_40_26
Pathway
fbn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fbn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HY931_03560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fbn03019
]
HY931_03560
Messenger RNA biogenesis [BR:
fbn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HY931_03560
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Motif
Other DBs
NCBI-ProteinID:
QQG52378
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Position
740860..742719
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AA seq
619 aa
AA seq
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MFVKNQNVPTNSSRRNFVSNSSRRVETSKVIKVASTPTPVIGKSVPKLRAPRPKFVPNFK
PAPSGSGLKICPLGGQEEVGRNCTVFEYDNDIIILDMGMQFADEDMPGIDYIVPNVASLR
GKEKNIRGVIFSHGHLDHIGAAPILLEQLGNPPIIGRKLTLAMIKHRQEDYKRGTTKNLK
TIVIDSIDQKISLGKFQISFFKVEHSIIDAVGVIIQTPHGTIIHPGDWTIEDDPLEGEVV
GYEYLSKLPSPRILMLESLGVAYSKERVPIKTSQGNLEKLISEAPGRVIIGTFASQLERV
TSLLAYCEKIGKKVILDGYGMKMNVKIAQELGYIPAHKNTLIPVEQIDKYPENKIVVICT
GAQGESNAVFSRIVNGNHRYINIRKSDVVIFSSSVIPGNERSVQKVKDLIYRLSDHVIHS
SIMDVHSGGHANIDDIKKILHQIKPDYFLPVYANHYMLVETKKLALREGFRDDQVFVLDN
GNIIKFQKGRQPVILKEKANTDYVMVDGLGIGDVSEIVLRDRRMMADDGMIVIIATIDAK
TGAIIGNPDLISRGFVHMKENRDLIEKTRMKVKQIVKDKNPTSAADDDYIKNKIRNEIGQ
FLFNSTKRRPMVLPVVIKV
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtaaagaatcagaatgttccgacgaactcgtcgagaagaaattttgttagtaat
tcttcgcgtcgcgtcgaaactagcaaggttattaaagttgccagcacccctacgccagtt
attggtaaatcggtgcctaaattaagagcccctaggccgaagtttgtgcctaattttaaa
ccggcgccgagcggttccggcttaaaaatctgtccgctcggcgggcaggaagaagtcggc
cgcaattgtaccgtttttgaatatgataatgatattatcattttagatatgggcatgcag
tttgctgatgaagatatgcccggaatagattatattgttccgaatgttgcttctttgcgc
ggtaaggaaaaaaatattcgcggcgttatttttagccatggtcaccttgatcatatcggc
gctgctccaattttattggagcaattagggaacccgccgattattggccgcaagctgacc
ttagcgatgattaaacaccgccaggaagactataagcgcggaacaactaagaacttaaag
actattgtcattgactctattgatcaaaagataagtttgggaaagttccaaatcagcttt
tttaaagttgaacattctattattgatgctgttggcgtgattatccaaacgccgcatggc
accataatccatcccggagactggacgattgaggatgatccactagaaggcgaagtcgtc
ggttatgaatacttgtctaaactgccttccccgcgcattctaatgttagaaagtctgggc
gtggcttatagtaaagaacgcgtcccgattaaaactagccaaggaaatttggaaaaatta
atcagcgaggccccgggacgcgtgattattggtacttttgcttcccagttagaacgcgtt
accagccttttggcttattgtgaaaagattggcaagaaagttattcttgatggctatggc
atgaaaatgaatgtaaaaattgctcaagaattgggctatatccctgctcacaaaaatact
ttgataccggtagaacagattgataaatacccggagaataaaattgttgtaatttgtacc
ggagcccaaggagaatccaatgccgttttctcccgaattgttaatggcaatcatcgctat
ataaatatcagaaaatcagatgttgtcatcttctcttcctcggttattcccggcaatgag
cgttccgtgcagaaagttaaggatttaatttatcgcttaagcgatcacgttattcatagc
agcattatggatgtccattccggtggccatgctaatattgatgacatcaaaaaaatctta
catcagattaaacccgattattttttaccagtctatgccaatcactacatgttagtggaa
actaagaaattagcgctacgcgaaggattccgcgatgatcaggtttttgtgctggataat
ggaaatataattaaatttcaaaaaggtcgccaacccgttatcttaaaggaaaaagccaat
accgattatgtaatggttgatggtcttggtatcggcgatgtttcagaaattgttttgcgc
gataggcgcatgatggctgatgatggcatgattgttattattgctactattgacgccaag
accggagctatcattggcaaccccgacttaatttctcgaggatttgtgcatatgaaagaa
aatcgtgatttgattgaaaagaccaggatgaaagtcaagcagatcgtgaaggacaagaat
ccgactagtgccgccgatgatgattatattaaaaataaaatcaggaatgaaattggacaa
ttcttattcaattctaccaagcgccggccgatggttttgccggttgttattaaagtttaa
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