Faecalibacter bovis: J9309_11120
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Entry
J9309_11120 CDS
T07705
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fbo
Faecalibacter bovis
Pathway
fbo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fbo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J9309_11120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fbo03019
]
J9309_11120
03400 DNA repair and recombination proteins [BR:
fbo03400
]
J9309_11120
Enzymes [BR:
fbo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J9309_11120
Messenger RNA biogenesis [BR:
fbo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J9309_11120
DNA repair and recombination proteins [BR:
fbo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
J9309_11120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Cas3-like_C_2
zf-CXXC
RRM_PARP14_1
QueC
Motif
Other DBs
NCBI-ProteinID:
QTV05318
LinkDB
All DBs
Position
complement(2296953..2298812)
Genome browser
AA seq
619 aa
AA seq
DB search
MTAKEVLNRYWGHSEFREPQEEIITSVLNKTDNLAVLPTGGGKSLCYQIPALLLPGVTLV
ISPLIALMKDQVNQLKYTGIPAELISSEYTQTQIIEILDQTKRGEIKLLYVSPERLLSSI
FIEHLRSVLLSLIAIDEAHCISEWGHDFRPAYHKIARIKQVFPSVPILALTATATDLIKK
EIIQKLQLFEPHVFQSTLKPENLSYHVVNSQDKYGDLLRYFKTRKESAIIFVRNRRQTQE
IAQFLLNNNIDAAYFHAKLTKEEKEQRQTDWTKSNSQIMVATNAFGMGIDKADVRTVFHI
DLPPSIESYYQEVGRAGRDGKKARGIYLYTKEDQINAENIFKANLPSKKEFLRIANALFS
HLIIGEGELHDLDYTLDVPLFSDKYAINAKTMVMFLDFLNTQGVIYQKNFNQLSTIQINI
APQTASAMNNPILDYLQRTSPGIFMQHREISEGRMSYELGQSITEIRQKINELKDRQILE
YSDRYLARFRFLVPREDSLFTNKLWTIFENIQISQWKRLQAISFYAEQTENCRERLLLAY
FNQKSESNCGHCDVCRKRKKAKDIKQQILDFIATGPKTNEEILTNFITSPKEKILQTLQI
LIDELKIENEGFASYKIKE
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
ttgactgcaaaagaagttttaaatagatattggggacacagcgaatttagagaacctcaa
gaagaaatcatcacttcagttttaaataaaacagataatttggctgttttacctactggt
ggtggaaaatcattatgctatcaaattccagctttattattaccaggagttacattggtt
atttctccgttaatcgctttgatgaaagaccaagttaatcaattaaaatacacaggaatt
cctgccgaattaatttcgagcgagtacacacaaactcaaattattgaaatccttgatcaa
acgaaacgtggtgaaattaaacttttatacgtttctcccgaacgattattaagttctata
tttatagagcatcttcgttccgttctactttctcttatagcaattgacgaagcgcattgt
atttctgaatggggacatgattttagaccagcatatcataaaattgctcgtataaaacaa
gtttttccaagtgttccaattttagcattgactgcaactgcaactgatcttattaaaaaa
gagatcatacaaaaacttcaattatttgaacctcatgtttttcaatcaaccttaaaacct
gaaaatttatcctatcatgtggtaaattcacaggataaatacggcgatttgttgcgttat
tttaaaacaagaaaagaaagtgcaatcatctttgttcgcaaccgtagacaaacacaagaa
attgctcaatttttactaaataacaatattgatgcagcatattttcatgctaaattaaca
aaagaagaaaaggaacaacgacaaacagattggaccaaaagtaacagccaaattatggtt
gctaccaatgcttttggaatgggaatagacaaagctgatgttcgaactgttttccatatt
gacttacctccaagtatcgaatcttattaccaggaagttggccgagctggtcgtgatggt
aaaaaagcgagaggaatttatttatatacaaaagaagatcaaatcaatgctgaaaatata
ttcaaagcaaatcttccttcaaaaaaagaattcttgcgcattgctaatgctttatttagc
catttaattattggtgaaggagaactgcacgatttagattatactttagatgttcctctt
ttttctgataaatatgcaattaatgccaaaaccatggtgatgtttttagatttcttgaat
acacaaggagttatttatcagaagaattttaatcaattaagtacaatacaaattaatatt
gcaccacaaactgcaagtgcaatgaataatcctattcttgattatttacaacgcacttct
cctggaatttttatgcaacatcgtgaaattagtgaaggtcgtatgagttatgaattaggt
caaagtatcactgaaatcagacaaaaaataaatgaattaaaagatcgacaaattcttgaa
tattctgatcgttacttagccagatttagatttttagttccacgagaagattctttattc
actaataaactttggacaatatttgaaaacattcaaatttcgcaatggaaacgattacaa
gccatttctttttatgcagaacaaacagaaaattgccgtgaacgattattattagcatat
tttaatcaaaaatcagaatctaattgtggacattgtgatgtgtgcagaaaacgcaaaaaa
gcgaaagatataaaacaacaaattttagattttatcgcaactggtcctaaaactaacgaa
gaaattcttactaatttcataacttcgccaaaggaaaaaatccttcaaacacttcagatt
ctaatagacgaattgaaaattgaaaatgaaggttttgcgagttataaaattaaagaataa
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