Flavobacteriaceae bacterium AU392: D1817_07525
Help
Entry
D1817_07525 CDS
T09691
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fbq
Flavobacteriaceae bacterium AU392
Pathway
fbq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fbq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D1817_07525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fbq03019
]
D1817_07525
03400 DNA repair and recombination proteins [BR:
fbq03400
]
D1817_07525
Enzymes [BR:
fbq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D1817_07525
Messenger RNA biogenesis [BR:
fbq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D1817_07525
DNA repair and recombination proteins [BR:
fbq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
D1817_07525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
TrmB
HTH_Cmi2_C
Rrf2
MarR_2
HTH_5
DUF2620
SH3_Hsr9
HTH_CodY
Cas3-like_C_2
PF0610-like_N
HTH_24
Motif
Other DBs
NCBI-ProteinID:
AXT19732
LinkDB
All DBs
Position
complement(1656861..1658765)
Genome browser
AA seq
634 aa
AA seq
DB search
MQHPIQILERYWNYTSFKPQQEDIINAVINGEDTFALLPTGGGKSLCFQIPALAKEGICI
VISPLIALMKDQVSTLKAKGIKAIALTSEFKYSDINVLLDNCIYGDYKFLYLSPERLQND
IVQERIKQMNVNLIAVDEAHCISQWGNDFRPSYKNIAILRKLQPSTNVIALTASATPKVI
DDIIKSLDFIAPSIFKQSFRRKNLAYMVFEAEDKQYKIEQILKKNPSSSIIYVRNRKNAL
EISYQLSVNGFTSTYYHGGLSNKEKEINFSQWINNQKQVMVATNAFGMGIDKPDVKTVIH
INFPDSIESYFQEAGRAGRNGEKAYAVILKHKGDEAFLKNQFLNVIASVEFIKKVYRKLC
NYFQIPYGEGEFTSHQFKFNDFCNTYKFNKLITYNAIQTLDRTSIVSLTPQFYNRTTVKV
LVSNTGLFNYIETHKETNTIIKTVLRTYGGIFDQEIKIDTQLISNKVGVDESVIIKTLEK
LQSDEIISLKLLKTDVEIMFLQPREDDKTINRVSKIVEQQNTHKKNQINSVLNYIYNDNI
CKSIQLLSYFGEKDIKNCGICSVCITRKKNYTSKNETESWGAIIMLLKDRAMSSREINAT
LDISDELINKLLKQLLEQGIVEITNTNTYYIKIR
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgcaacatccaatacaaatactagaacgctattggaattatactagttttaaaccgcag
caagaagacattattaatgcagtaataaacggtgaagatacctttgctttattaccaacc
ggaggcggtaaatctttatgttttcagataccagcattggcaaaagaagggatttgtatt
gtgatctctccattaatagctttaatgaaagatcaggtaagcactttaaaagcaaaagga
ataaaagcaatagcacttacaagcgaatttaaatacagtgatataaatgttttattagat
aactgtatctatggagattacaagtttttatatctttctcctgagcgcttacagaacgat
attgtacaagaacgaataaagcaaatgaacgtaaaccttattgctgtagacgaagcgcac
tgtatttcacaatggggtaacgattttaggccatcttacaaaaacatagctatacttaga
aaacttcagccaagtactaacgttatagctttaacagcttctgcaaccccaaaagtaatt
gatgatattataaaatctttagattttatagctccaagcatttttaaacaatcttttaga
agaaaaaatttagcttatatggtatttgaagctgaagataaacagtacaaaatagagcaa
attttaaagaaaaacccaagttcatctatcatatatgttagaaatagaaaaaatgcttta
gaaatcagttatcagctttcagtaaatggatttacaagtacttattatcatggtggatta
agtaataaagaaaaggagattaatttttcgcaatggataaacaatcaaaaacaagtaatg
gtagctaccaatgcttttggcatgggtatagataaaccagatgtaaaaactgtaatccac
attaatttccctgatagtatcgaaagttattttcaagaagctgggcgtgctggcagaaat
ggtgaaaaagcttatgcagttattttaaaacacaaaggagatgaagcgtttttaaaaaat
caatttttaaatgtaattgcatcggtagaatttataaaaaaggtatatcgaaaactatgt
aactatttccaaattccatatggagaaggtgaatttacatcacatcaatttaaatttaat
gatttctgcaatacttataagtttaacaaattaatcacttacaatgccatacaaacttta
gatagaacaagtattgtgagtttaacacctcaattttataatcgtacaactgttaaggtt
ttagtatctaatactggtttgtttaattatattgaaacacacaaagaaaccaatactatt
ataaaaactgtcttgagaacttatggcggtatttttgatcaagaaataaaaatagatact
caattaatttctaataaagtaggtgttgatgaaagtgttattatcaaaacattagaaaaa
ttgcaaagtgatgaaatcatctctttaaaactattaaaaacagatgtcgaaattatgttt
cttcaacctagagaagatgataagactattaatagagtttcaaaaattgtagagcagcaa
aatacacataaaaaaaatcaaataaattctgtattaaactacatctataatgataatatt
tgcaaaagcattcagcttctctcctattttggggaaaaagatattaaaaattgtggtatt
tgctctgtttgtattaccagaaaaaaaaactatactagcaaaaatgaaacagaaagctgg
ggtgcaattattatgttattaaaagacagagcaatgtcttcaagagaaataaatgctact
ttagatattagtgacgaactcattaataaattattaaaacagttattagagcaaggtatt
gtagaaatcactaatacaaacacctattatattaaaataagatga
DBGET
integrated database retrieval system
