Flavobacteriaceae bacterium AU392: D1817_12810
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Entry
D1817_12810 CDS
T09691
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fbq
Flavobacteriaceae bacterium AU392
Pathway
fbq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fbq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D1817_12810 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fbq03019
]
D1817_12810 (recQ)
03400 DNA repair and recombination proteins [BR:
fbq03400
]
D1817_12810 (recQ)
Enzymes [BR:
fbq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D1817_12810 (recQ)
Messenger RNA biogenesis [BR:
fbq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D1817_12810 (recQ)
DNA repair and recombination proteins [BR:
fbq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
D1817_12810 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
HHH
Motif
Other DBs
NCBI-ProteinID:
AXT20728
LinkDB
All DBs
Position
complement(2783120..2785321)
Genome browser
AA seq
733 aa
AA seq
DB search
MNMEKDKLQQALKKYFGFSNFKGLQEEVIENIVSGNNTFVIMPTGGGKSLCYQLPALMKE
GTAIVVSPLIALMKNQVDAIRGVSNEDGVAHVLNSSLNKTEVKQVKSDISNGITKLLYVA
PESLTKEENVEFLRGETISFLAIDEAHCISEWGHDFRPEYRNLRHIIKRIGDNIPIIGLT
ATATPKVQEDILKNLGISDAKTFKASFNRPNLFYEIRPKTKNVDADIIRFIKQNEGKSGI
VYCLSRKRVEELAQVLQVNGLKAVPYHAGLDAKTRARHQDMFLMEDVDVVVATIAFGMGI
DKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAYYAYKDIEKLEKFMSGKPVAEQ
EIGHALLQEIVAFAETSISRRKFILHYFGEEFDNETGEGGDLDDNVRNPKKQVEAKNEVV
TLLDVVSKTNETYKSKDLVNVIIGKENALIKSHRTDEQVFFGVGKAKEDKFWMALIRQVL
VAGLLRKDIETYGVLKGTDTGKDFINNPVSFMMTEDHIFDDTNDDSIITNSKGSGGVADE
ALMRMLKDLRKQNAKKLGVPPFVIFQDPSLEDMALKYPISLEELANVHGVGEGKAKKYGK
DFVALIAKYVEENDIVRPEDMIVKSTGSNSALKLYIIQNIDRKLPLDDIASAKGMEMVDF
IKEMEVIVFSGTKLNINYWIDEVLDEDQQEEIHDYFMESETDEIDAAIEEFDGDYDDEEL
RLYRIKFISEVAN
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgaatatggaaaaagataaattacaacaagctctaaaaaaatattttggctttagtaat
tttaagggattacaagaagaggttatagaaaatatagtctctggaaataatacgtttgta
ataatgccaactggtggaggaaaatctctttgttatcagttaccagctttaatgaaagaa
ggtacggcaatagtagtatctcctttaattgctttaatgaaaaatcaagtggatgctatt
cgaggagtctcaaatgaagatggtgttgcacatgtattaaattcttctttaaataaaaca
gaagtaaaacaggtgaaatctgatatttctaatggaatcactaaattactttatgtagct
ccagaatcactgacgaaagaagaaaatgttgaatttttaagaggtgaaaccatttcattc
ttggctatagacgaagctcattgtataagtgaatggggacatgactttaggccagaatac
agaaatttaagacatataattaagcggataggtgataatattcctattataggacttaca
gctaccgctacacctaaagtacaagaagatatacttaaaaacttaggaatttcagatgct
aagacctttaaagcatcgtttaatcgtcctaatttattttatgagatacgtccaaaaaca
aaaaatgtagatgcagatattattcgttttataaaacaaaatgaaggaaaatcgggtatt
gtatattgtttaagccgtaagcgtgttgaagaattagcacaagtattacaggttaatgga
cttaaagctgtaccataccatgcagggttagatgcaaaaacaagagcacgacatcaagac
atgtttttaatggaagatgtagatgtagtggtggccacaatagcgtttggtatgggtata
gataagcccgatgttcgttttgtaattcatcatgatatcccgaaaagtattgaaagttat
tatcaagaaactggacgtgctggacgtgatggaggagaagggcattgtttagcatattat
gcttataaagatatagagaaactcgaaaaattcatgtctggaaaacctgttgcagaacag
gaaataggacatgctttattacaggaaattgtagcttttgctgaaacttctatttctaga
agaaaatttatacttcattattttggagaagagtttgataatgaaacaggagaaggtggt
gatttagatgataatgtacgtaatccaaaaaaacaagttgaagctaaaaatgaagtagtt
accttattagatgtagtgtccaaaacaaatgaaacctataaaagtaaagacctagtaaat
gttattataggtaaggaaaatgctttaataaaatctcaccgtacagatgaacaagtgttt
tttggtgttggtaaagctaaagaagataaattttggatggcattaattcgtcaggtttta
gtagctggattgttgcgaaaagatattgaaacctatggagtattaaaagggacagataca
ggtaaagattttattaataatccagtatcatttatgatgaccgaagatcatatttttgat
gatactaatgatgatagtattattacgaactctaaaggaagtggaggtgtagcagatgaa
gctttaatgcgaatgcttaaagatttacgtaaacagaatgctaaaaaattaggtgttcct
ccatttgtgatttttcaggacccctctttagaggatatggcacttaaatatccaatttct
ttagaagaattagcaaatgtacatggtgtgggtgagggcaaagcaaaaaaatatggtaaa
gattttgttgcacttattgctaaatatgtagaagaaaatgatattgttagaccagaagat
atgattgtaaaatctactggaagtaattctgctttaaaattatatattattcaaaatata
gataggaaattacctctagacgatatagcatctgccaaaggaatggagatggtggatttt
ataaaagaaatggaagtaattgtattttctggaactaaacttaatatcaattattggata
gatgaggttttagatgaagatcaacaagaagagattcatgattatttcatggaatctgaa
actgatgaaatagatgcagcaatcgaagaatttgatggagattacgatgatgaggaactt
cgtttatatcgtataaagtttattagtgaggtagcaaattaa
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