Flavobacterium branchiophilum: FBFL15_0988
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Entry
FBFL15_0988 CDS
T01625
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
fbr
Flavobacterium branchiophilum
Pathway
fbr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FBFL15_0988 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fbr03019
]
FBFL15_0988 (pnp)
03016 Transfer RNA biogenesis [BR:
fbr03016
]
FBFL15_0988 (pnp)
Enzymes [BR:
fbr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
FBFL15_0988 (pnp)
Messenger RNA biogenesis [BR:
fbr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FBFL15_0988 (pnp)
Transfer RNA biogenesis [BR:
fbr03016
]
Prokaryotic type
tRNA degradation factors
FBFL15_0988 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
KH_1
S1
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
CCB69087
UniProt:
G2Z7H9
LinkDB
All DBs
Position
complement(1160071..1162218)
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AA seq
715 aa
AA seq
DB search
MIPKVSKTIIDLGDGRSISIETGKLAKQADGSVVVQMGNSMLLATVVSARQASPGIDFLP
LTVDYREKFAAAGRFPGGFFKREARPSDSEVLTMRLVDRVLRPLFPDDYHAETQVMVQLM
SHDEEVMPDALAGLAASAALAISDIPFSTLISEVRVARIDGKLLINPSRAQLALSDIDMM
IGASKDSIAMVEGEMKEISESEMVEAIKFAHEAIKIQIEAQEKLQELVGKKDIRTYENEK
SDEAIFEKVKAAAYQKCFDIAKEGTAKHERSEKFALVKEEVKALFTEEELSENGDLVSKY
FYKVNKEAVRNVILDLGLRLDGRKTTEIRPIWAEVDYLPSVHGSAIFTRGETQALATATL
GTSREANQIDSPSEQGEEKFYLHYNFPPFSTGEAKPLRGTSRREVGHGNLAQRALKNMIP
SDCPYTIRVVSEVLESNGSSSMATVCAGTLSLLDAGIQMIKPVSGIAMGLITDGERFAVL
SDILGDEDHLGDMDFKVTGTADGITACQMDIKIEGLAYNIMEQALAQARDGRLHILGKIT
EVLATPRPDVKKHAPKIITRTIPGNFIGALIGPGGKVIQELQKATGTTIVINEVDEQGVV
EILGTDPDGIAAVLAKIDSIVFKPQLGEAYEVKVIKMLDFGAVVEYTAAPGNEVLLHVSE
LAWERTENVSDVVKMGDVFQVKYLGIDPKTRKEKVSKKALLPRPPREDKKEAPKS
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgattccaaaagtatcaaaaacaattatcgatttaggagatggacgaagcatctcaatc
gaaacaggaaaattagccaaacaagccgatggatctgtagtagtacaaatgggcaactca
atgttgctagctaccgtagtatctgcccgtcaggccagcccaggaattgattttttgcca
ttgacggtagattatcgagaaaaatttgcggcagcaggacgatttccaggtggttttttt
aagagagaagcccgtcctagtgacagcgaagttttgaccatgagattggtagatagggtt
ttgcgaccattatttccagatgattatcatgcagaaactcaagtaatggttcagttgatg
agtcacgacgaagaggtaatgccagatgcacttgctggattggccgcttcggcagcattg
gcaatatcggatattccattttcaactttaatttctgaagtacgtgtggccagaattgat
ggcaaattgcttatcaatcctagtcgtgcccaattggctttgtctgatatagacatgatg
attggagcatctaaagattctattgccatggttgaaggagaaatgaaggaaatttcagaa
tctgaaatggtagaagccatcaaatttgcacatgaagccatcaaaattcaaattgaagca
caggaaaaattacaagagctagtaggtaaaaaagacatcagaacgtatgaaaacgagaaa
tctgatgaagccatttttgaaaaagtaaaagccgcagcataccaaaaatgttttgacatt
gccaaagaaggaactgccaaacacgagcgttctgaaaaatttgctttagttaaagaagaa
gtaaaagccttatttacagaagaagaattgtctgagaatggcgatttagtttcaaaatat
ttttacaaagtaaataaagaagccgttagaaatgtcattttagatttaggtttgagattg
gacggcagaaagactacagaaatacgaccaatatgggccgaggtagattatttgccatct
gtacacggttcggccatttttacacgaggcgaaacacaagctttggcaactgccacttta
ggaacctcgagagaggccaatcaaattgattctccaagcgagcaaggagaagaaaaattt
tacttacattataacttcccaccgttttcaacaggagaagcaaaaccattaagagggaca
tcgagaagagaagtgggacatggaaatttggctcaaagagctttaaaaaacatgattcct
tcagactgcccttatactattagagtagtttctgaagtgttagagtccaatggatcgtcg
tctatggcaacggtttgcgcaggtacattatctttgttagatgctggtattcaaatgatt
aaacccgtttctgggattgcaatgggattgataacagacggagaaagatttgcagtattg
tctgatattcttggcgacgaggaccatttaggcgatatggattttaaagtaactggtaca
gctgatggtattacggcatgtcaaatggacatcaaaattgaaggtttagcatacaatatc
atggagcaagcattagcacaagctcgagatggtcgtttgcatattttaggaaaaattaca
gaagtactagcaacaccaagacccgatgttaaaaaacatgcaccaaaaatcatcacaaga
actattcctggcaactttattggagcattaattggccctggaggcaaagtaattcaggaa
ttacaaaaagcaacaggaacaactatcgtaatcaacgaagtggatgagcaaggagttgta
gaaattttgggtaccgatccagatggcattgcagcagtgttagcaaaaattgattctatt
gtatttaaaccacaacttggcgaagcttatgaagtaaaagtcattaaaatgttagacttt
ggtgcagtagtagaatatacggctgcccctggaaacgaagtccttttgcacgtatctgaa
ttggcatgggaacgtaccgaaaatgtttcggatgttgtaaaaatgggcgatgtatttcaa
gtaaaataccttggaattgaccctaaaacacgtaaagaaaaagtatctaaaaaagcactt
ttaccacgtcctccaagagaagacaaaaaagaagctccaaaatcttaa
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