Flavobacterium branchiophilum: FBFL15_1051
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Entry
FBFL15_1051 CDS
T01625
Symbol
rtcB
Name
(GenBank) Protein of unknown function RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fbr
Flavobacterium branchiophilum
Brite
KEGG Orthology (KO) [BR:
fbr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fbr03016
]
FBFL15_1051 (rtcB)
Enzymes [BR:
fbr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FBFL15_1051 (rtcB)
Transfer RNA biogenesis [BR:
fbr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FBFL15_1051 (rtcB)
Prokaryotic type
tRNA splicing ligases
FBFL15_1051 (rtcB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
CCB69142
UniProt:
G2Z7M2
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All DBs
Position
1234963..1236354
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AA seq
463 aa
AA seq
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MGNKISGKDLIKLGFPKNNAINIALGQINRYRKREKKEPILNEAKEVLLSPEKFKNHGTW
GKVAEGLVNPVSIRMHQLHNTRAPFTIFGENDIDAQAKFQLYDALKLPISVAGALMPDAH
SGYGLPIGGVLATNNAVIPYGVGVDIGCRMSLSVYDLPASFLKGKDHQLQAILKNHTKFG
MTEVHQNKADHAIFSHHGFQDVPLLKSLLTKAYKQLGTSGGGNHFVEFGIVDLQNPLSEW
HLAPGSYLAVLSHSGSRGLGANIAKHYTYLATKQCPLPKHVQHLAWLDLNTHDGQEYWLA
MNLAGDYAKACHDDIHRRIAKALGRRIALTIENHHNFAWKETVNNQECIVHRKGATPASL
GELGIIPGSMTAPGFIVRGKGNLESLQSASHGAGRLYSRSKCKSIFTQSAIKKELQKFDV
QLIGGNIDEAPMAYKNIQQVMKNQEELVEIIGTFTPKIVRMDK
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaaataaaatatctggaaaagacttaataaaattaggttttccaaaaaataatgca
ataaatattgccttggggcaaattaatagatatagaaaaagagaaaaaaaagaacctatt
ttgaatgaggcaaaagaggttttgttgtcgccagaaaagtttaaaaatcatggtacttgg
ggcaaagttgccgaaggattggttaatcctgtatcaataagaatgcaccagttgcataat
acacgagcaccttttaccatttttggagaaaatgacatcgatgctcaagcaaagtttcaa
ttgtatgatgcattaaaattgcccatatcggttgcaggagcgcttatgcccgatgcacat
tcgggttatggattgccaataggtggtgttttggctactaataatgccgtaattccttat
ggcgttggggttgatattggatgtcggatgagtttgtctgtttatgatttgccagcttct
tttctgaaaggcaaagaccatcaactgcaagccattttgaagaatcataccaaatttggc
atgaccgaggttcatcaaaataaagctgatcatgccatttttagccatcacggatttcaa
gatgtgccgttgctgaaaagtttattgactaaggcatacaaacaacttggtacttctggt
ggaggcaatcattttgtggaatttggcattgtagatttacaaaatccgctttcagaatgg
catttagcccctggcagttatttggcggttttatcgcacagtggttcgagaggtcttgga
gccaatattgccaaacattatacctatttagctacaaaacaatgtccgttacccaagcat
gttcaacatttagcatggttagatttgaacacacacgatggacaagaatactggttggca
atgaatttggctggcgattatgcaaaagcctgccatgacgatattcatagacgcatagct
aaagcattgggcagaagaattgcattgaccatagaaaaccaccacaattttgcttggaag
gaaaccgttaataatcaagagtgtattgtgcacagaaaaggggcaacaccggcaagttta
ggcgagcttggcattattcctggttccatgacagcaccagggtttattgtaagaggtaaa
ggcaatttggaaagtttacaatcggcttcacatggtgccggaaggctatattcgaggtcc
aaatgcaagtctatttttactcaaagtgcaattaaaaaagagttgcaaaaatttgatgta
cagctcattggaggaaatatagacgaagctccaatggcatacaaaaacatacagcaagtg
atgaaaaatcaagaggaattagttgaaattataggaacgtttacgccaaaaattgtaaga
atggataaatag
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