Flavobacterium branchiophilum: FBFL15_1715
Help
Entry
FBFL15_1715 CDS
T01625
Name
(GenBank) Probable ATP-dependent RNA helicase, DEAD/DEAH box family
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fbr
Flavobacterium branchiophilum
Pathway
fbr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FBFL15_1715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fbr03019
]
FBFL15_1715
Enzymes [BR:
fbr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FBFL15_1715
Messenger RNA biogenesis [BR:
fbr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FBFL15_1715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
Cas3-like_C_2
UvrD_C
Hydrolase
NRDD
Motif
Other DBs
NCBI-ProteinID:
CCB69775
UniProt:
G2Z1K7
LinkDB
All DBs
Position
2008805..2010058
Genome browser
AA seq
417 aa
AA seq
DB search
MLFEAFSLSKSIQKAIVEQGYTTATPIQEQSIPIILAGNDLVGCAQTGTGKTAAFAIPII
HQLHRIVGSSKKPKVIRALVVTPTRELAVQIGQNFDSYAQYTNLTQLTIFGGVSQLPQVE
TLKKGVDVLIATPGRLLDLHKQGFIHLHDLHTLVLDEADQMLDMGFVNDVKKIVKLTPKN
RQTLLFSATMPIAIRELAEMFLNNPESVTVSPVSSTAEKVSQKIYFVDKTEKRNLLYHLI
KNENISDVLIFSRTKHGADNVVKALRKNNIPAEAIHGDKSQNARQRVLEAFKNKEIGVLV
ATDIAARGIDIDQLPFVINFDLPNIPETYVHRIGRTGRAGNGGIAISFCSKDEEPYWKDI
QKLIKVDVAIVTDHPYPWHSGSPKSVPETAPKNSNRSGGAHKSRKSAGSKQNKKRWY
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgttattcgaagcattttcactatcaaaaagtattcaaaaagccattgtcgagcaaggc
tataccactgcaactcccattcaagaacaatcgatacccattatattagcaggaaacgat
ttggttggatgtgctcaaacaggtacaggaaaaactgcagcttttgccattcctatcatc
catcaactacatcgaattgtgggttcgtcaaaaaaaccaaaagtgataagagcactagtt
gtaaccccaactcgtgaattggcagtacaaattggtcaaaattttgatagctatgctcaa
tataccaacctaacgcaactcaccatttttggcggggtgtcgcagttgccgcaagttgaa
accttaaaaaaaggagtagatgttttgatagcaacgcctgggcgattattagatttgcat
aaacaaggctttatacatttgcacgatttgcacacccttgtattggacgaagcagaccaa
atgctggatatgggatttgtaaacgatgtaaaaaaaattgttaaattaacaccaaaaaac
cgacaaaccttacttttttcagccactatgcccattgcaattcgggaattagccgaaatg
tttttaaacaatcccgaatctgtaacggtgtcgcctgtatcttctaccgcagaaaaagta
tcgcaaaaaatatattttgtagataaaacagaaaaaagaaatttattatatcatttaata
aaaaatgaaaatatttctgacgtgttaattttttcaagaaccaaacacggggcagacaat
gttgtcaaagcgctcagaaaaaacaatattcctgcagaagctattcatggagacaaatcg
caaaatgcccgtcaaagggttttagaagcatttaaaaataaagaaattggtgttttggtt
gccaccgatattgctgcaagaggtatagatatcgaccaattgccgtttgttatcaatttt
gatttgcctaatattcccgaaacgtatgtacacagaattggtagaactggcagggccgga
aatggtggtatagccatctctttttgcagcaaagatgaagaaccatactggaaagacatc
caaaaattaatcaaagttgatgttgccatcgtaaccgatcatccttacccttggcatagt
ggtagcccaaaaagtgtgcccgaaactgcaccaaaaaacagcaatcgaagcggcggtgct
cacaaatcaagaaaatctgctggctctaaacagaataaaaaaagatggtactaa
DBGET
integrated database retrieval system
