Flavobacterium branchiophilum: FBFL15_2032
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Entry
FBFL15_2032 CDS
T01625
Symbol
mfd
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fbr
Flavobacterium branchiophilum
Pathway
fbr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fbr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FBFL15_2032 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fbr03400
]
FBFL15_2032 (mfd)
Enzymes [BR:
fbr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FBFL15_2032 (mfd)
DNA repair and recombination proteins [BR:
fbr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FBFL15_2032 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Cas3-like_C_2
UB2H
Motif
Other DBs
NCBI-ProteinID:
CCB70063
UniProt:
G2Z2A8
LinkDB
All DBs
Position
2378623..2381973
Genome browser
AA seq
1116 aa
AA seq
DB search
MSKKFLNILEQAPKVKQIVSSLQIANAKLHLKGLIGSSASFVLEALYKQQSNPFLVILND
KEEAAYFLNDLEHLINDQEVLFYPASYKRPYQMEQTDNANVLLRAEVLNAINGVAKKKVI
VTYPEALFEKVVTKKDLDKNTLKVQIGDKISIDFVNEMLFEYEFKRVDFITEPGEFSVRG
GIVDVFSFSNDFPYRIEFFGNEVDSIRTFDVETQLSVEKQQQISIIPNVENKVFQQNRES
FLDYIHPQTVIFIQNTEMLLSALDQYFDRAIQIFDRLDGGIKRLSPIELFINQEQFVQKS
KAFSVVEMASKAVYRTTKTIEFHIQPQPSFNKQFELLLQNLNDNQTNGIHNYLFCANEAQ
AKRFHDIFTSLDEVNSEHIRKQYSCITLPIYQGFIDLEHQIACYTDHQIFERYHKFNIKN
GYAKKQTITLKELTTLAVGDYVTHIDHGIGKFGGLQKIQVEGKTQEAIKLVYADNDIVYV
SIHSLHKISKFNGKDGSPPKIYKLGSNAWKLLKQKTKARVKHIAFNLIQLYAKRRLDKGF
QCAPDSYLQAELESSFIYEDTPDQLKSTQEIKADMESDSPMDRLVCGDVGFGKTEVAIRA
AFKAVDNSKQVAVLVPTTILAYQHYRTFSERLKDMPVSVGYLNRFRTAKQKAETLKQLAE
GKLDIVIGTHQLVNKNVVFKDLGLLIVDEEQKFGVNVKDKLKTIAANVDTLTLTATPIPR
TLQFSLMAARDLSVISTPPPNRYPIESQVVGFSEETIRDAISFEIQRNGQVYFINNRIEN
IKEVAGMIQRLVPDAKVGIGHGQMDGSKLEELMLAFMNGDFDVLVATTIIESGLDVPNAN
TIFINNAHHFGLSDLHQMRGRVGRSNKKAFCYFICPPYSAMTDEARKRIQALEQFSELGS
GFNIAMKDLEIRGAGDLLGGEQSGFINEIGFDTYQKIMNEAIEELKENEFKDLYENEDKP
EKVYVKDLHLDTDFELLFPDDYINNISERLNLYNELSLIKDDLTLENYQQKLIDRFGPLP
KQAVSLLNSIKIKWIATQLGIEKLVMKQGKMICYFVSDQQSSYYSSTTFTTILQFVQKNQ
KLASMKEKQTPNGLRLLLTFDQVKSIQKALELMSMI
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaaaaaatttttaaatatcctagagcaagcgccaaaagtcaaacaaattgtttcg
agtttgcaaattgcaaatgccaaactgcatcttaaagggcttatcgggtcgtcggcatca
tttgtattggaagccctttacaaacaacaaagtaatccttttttggtaattttaaacgat
aaagaagaagccgcttattttttaaatgatttagaacatttgataaacgatcaagaggtt
ttgttttatcctgcttcctacaaacgaccttaccaaatggaacaaacagacaatgccaat
gtgctgttgcgggcagaggtgctgaatgccattaatggagttgctaaaaaaaaggtaatt
gttacctatcctgaagcactttttgaaaaagtagttaccaaaaaagatttggataaaaac
acgttgaaagtacaaattggcgacaaaatttcgatcgattttgtaaacgaaatgctattt
gaatatgaatttaaacgggtagattttattacagaacctggcgaattttctgtaaggggc
ggtattgtagatgtgttttcgttttctaatgattttccttatcgcatcgaattttttgga
aacgaagtcgattctatccgaacttttgatgtagaaacccaattgtctgtcgaaaaacaa
caacaaatttcgattattcccaatgtagaaaacaaagtttttcaacaaaatagagaaagt
tttttagactatatccatccgcaaacggttatttttattcaaaatacagaaatgcttttg
agtgcattggatcaatattttgaccgtgccattcaaatatttgaccgtttagacggaggc
atcaaaaggctttcaccaatagaattattcatcaatcaagaacaattcgttcaaaaaagt
aaagctttttcagtagtagaaatggcttcaaaagccgtatatcgtaccaccaaaacgatt
gaatttcatatacaaccacaaccttctttcaataaacaatttgaattgttgttgcaaaac
ttgaatgacaatcaaaccaacggcattcacaattatttgttttgtgccaatgaggctcaa
gccaaacgttttcacgatatttttacatcgttagacgaggtgaactccgaacatattcgc
aaacaatattcgtgtattactttgcctatctatcagggattcattgacttagaacatcaa
atagcttgttataccgaccatcaaatatttgaacgttatcataaatttaacatcaaaaat
ggttatgccaaaaaacaaaccattaccctcaaagaattgacaacacttgccgtgggcgat
tatgttacccatatcgatcatggcattggaaaatttggaggtcttcaaaaaatacaagtc
gagggcaaaacccaagaagccatcaaactggtatatgccgacaatgatattgtatatgta
agtattcattcgttgcataaaatttcgaaattcaatggcaaagatggttcgcctccaaaa
atttataaactagggtcaaatgcttggaaacttttaaaacaaaaaaccaaagcacgggta
aaacatattgcgttcaatttgatacaactgtatgccaaacgccgattggacaaaggtttt
cagtgtgctccagacagctacttgcaagccgagctcgaaagttcgtttatatatgaagat
actccagaccaactcaaatcgacacaagagataaaggccgacatggaaagcgatagcccc
atggacaggcttgtgtgtggcgatgtgggttttggcaaaaccgaagtagccattagagcc
gcttttaaggctgtggacaattccaaacaagtggctgtactcgtgccaacaaccattttg
gcctatcagcattaccgtactttttcggaaaggctcaaagacatgcctgtatctgtcggc
tatttaaaccgatttagaactgccaaacaaaaagccgaaaccctcaaacaactagcagaa
ggcaagttagacatcgttattggtacccatcagctcgttaataaaaatgtagttttcaaa
gatttgggtttacttatagtggacgaagaacaaaaatttggagtaaacgttaaggacaaa
cttaaaaccatagcggccaacgtggataccctaacacttacggctacccctatcccaaga
acgcttcagttttcgttgatggctgcccgtgatttgtctgttatcagcacaccaccgcca
aacaggtatccgattgaatcacaagtagttgggttttctgaagaaaccattcgtgatgcc
attagttttgaaatacaacgcaacggacaggtttattttatcaataatagaatagaaaac
atcaaagaagtagcaggcatgattcaacgccttgtgcctgatgcaaaagtgggcattggc
cacggccaaatggacggaagcaaactcgaagaactcatgctggcctttatgaacggtgat
tttgatgtgttggtggccacaactatcatagaaagtggcctcgatgtacccaatgccaat
accatttttatcaataatgcccatcattttggactatccgatttgcatcaaatgagagga
cgagttggacgaagcaataaaaaagctttttgctattttatttgtccaccctattcggcc
atgacagacgaagcccgaaagaggatacaagctttagaacaattttctgaacttggaagt
gggtttaacatcgcaatgaaagacctcgaaataagaggtgcaggcgatttgttaggcggc
gaacaaagtggttttatcaatgaaattggttttgatacgtatcaaaaaatcatgaatgaa
gccatagaggaactcaaagaaaatgaatttaaagacctgtatgaaaacgaagacaaaccc
gaaaaagtgtatgttaaagatttgcatttggataccgattttgagcttttgtttccagat
gactacatcaataacatatccgaacgacttaatttatacaacgaattgagccttataaaa
gacgatttgacccttgaaaattaccaacaaaaactcatagaccgctttggtcctttgccc
aaacaggcagtatcgttgctcaacagcatcaaaataaaatggattgccacacaactaggc
atcgaaaaactggttatgaaacaaggtaaaatgatttgttattttgtgtccgatcaacaa
agtagttattatagttctacaacatttacaactatattacagtttgtacaaaaaaaccaa
aaattagcaagtatgaaagaaaaacaaactccaaacggactgcggcttttacttacattt
gatcaagtaaaatcaatccaaaaagccctggagctcatgtctatgatttaa
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