Flavobacterium branchiophilum: FBFL15_3004
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Entry
FBFL15_3004 CDS
T01625
Symbol
recJ
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
fbr
Flavobacterium branchiophilum
Pathway
fbr03410
Base excision repair
fbr03430
Mismatch repair
fbr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fbr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
FBFL15_3004 (recJ)
03430 Mismatch repair
FBFL15_3004 (recJ)
03440 Homologous recombination
FBFL15_3004 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fbr03400
]
FBFL15_3004 (recJ)
DNA repair and recombination proteins [BR:
fbr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
FBFL15_3004 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
FBFL15_3004 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FBFL15_3004 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
CCB70948
UniProt:
G2Z6C8
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All DBs
Position
3469477..3471165
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AA seq
562 aa
AA seq
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MRWTIKPKPSDASIAVLVSQLQVSPIIATLLLQRGVSTFEQARQFFRPQLSDLHNPYLMT
DMHLAVARIEKAIENQENILVFGDYDVDGTTAVSLVSSYLRSYYPNVATYIPDRYTEGYG
VSFQGIDFADDNGFSLIIALDCGIKSIQHVAYATEKNIDFIICDHHRPGDELPKAVAVLD
PKRSDCSYPYDELCGCGIGFKLIQALAQNRQQTIEDLVPYLDLVATAIAADIVPMTGENR
ILAKFGLEVINSQPRAGILAMIQNIKKKELTITDVVFIIAPRINAAGRIKHGNEAVALLT
EFDLNEAEKFASEIEQYNTDRKDLDKIMTQEALLQIEENDEQNRFTTVVFQDNWHKGVIG
IVASRLTEKYYRPTIVFTKNDNKYAASARSVKDFDVYDALEKCAEHLEQFGGHKYAAGMT
LKPENYQNFKAAFEKTVRDTILPELLIPEILVDAALEFDEITPKFIRILKQFEPFGPENM
SPVFYSKNIKDTGYGKTMGKNDEHLKLYVKQNYGNSFGAIGFNLGNKLNKTQNQQPFEAV
YNIDENDYNGSINVQLRLKDLR
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgcgttggacaatcaaacccaaaccttcggatgcaagtatagcagtattggtttcgcaa
ttgcaagtgagtccaattattgcaaccctgttattacaacggggcgttagcacatttgaa
caagcccgtcagtttttcagacctcaactttcagacttgcacaatccatatttaatgacc
gatatgcatttggcggtagcccgaatagaaaaagctattgaaaatcaagaaaatatattg
gtttttggtgattatgatgtagatggtacaacggcagtatccttggtgtcgagctacttg
agaagttactatccaaacgtagcaacgtatattccagaccgatataccgaaggctacggt
gtttcgtttcaaggcatcgattttgcagacgataatggtttttcgctgatcattgcacta
gattgcgggataaaatcgatacaacatgtggcttatgcaactgaaaaaaacatagacttt
atcatttgcgaccaccaccggcctggggacgaattgcccaaagcagtagccgtattggac
cccaaaagatcggattgtagttatccttatgacgagttgtgtggctgcggcattgggttc
aaactgatacaggcattggcacaaaacaggcaacaaaccattgaagatttggtgccttat
ctggatttagtagccactgcaattgcggcagacattgtgcctatgacgggcgaaaataga
attttggcaaaatttggattagaagtcatcaacagtcagccaagggctggtattttggca
atgattcaaaatattaagaaaaaagaactcactataaccgatgtagtatttatcattgct
cccagaatcaatgccgcaggccgcatcaaacatggcaatgaagcagtagcactacttaca
gaatttgatttgaatgaagccgaaaaatttgcatcggaaatagaacaatacaataccgat
agaaaagatttggacaaaatcatgacccaagaagccttattgcaaatagaagaaaacgac
gaacaaaaccgttttacaacagtcgtttttcaggacaattggcacaaaggtgttattgga
attgtggcttcgagacttaccgaaaagtattacagacccactattgtttttacaaaaaac
gacaataaatatgccgcttcggctaggtctgtcaaggattttgatgtgtatgatgctttg
gaaaaatgtgccgaacatttagagcaatttggcggacacaaatatgcagctggaatgacg
ttgaaaccagaaaattatcaaaattttaaagctgcttttgaaaaaacagtccgagatacc
attttgcccgagctattaattccagaaattttggtagatgcagcacttgaatttgatgaa
ataacacccaaattcattcggattttaaaacaatttgaaccttttggtccagaaaatatg
tcgcctgtattctattcaaaaaacataaaagacacgggatatggcaaaactatgggcaaa
aatgacgaacatttgaaactttatgtcaagcaaaattatggcaacagctttggagcaatt
ggttttaatttgggaaacaaattaaacaaaacccaaaaccaacaaccctttgaagctgta
tataatattgatgaaaatgactataatggcagcatcaatgtacaacttcgattgaaagat
ttgaggtag
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