Flammeovirgaceae bacterium: D770_04365
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Entry
D770_04365 CDS
T04058
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fbt
Flammeovirgaceae bacterium
Pathway
fbt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fbt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D770_04365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fbt03019
]
D770_04365
Enzymes [BR:
fbt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D770_04365
Messenger RNA biogenesis [BR:
fbt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D770_04365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
CMS1
Utp25_C
P-loop_SecA
ERCC3_RAD25_C
AAA_22
Fimbrial_PilY2
Motif
Other DBs
NCBI-ProteinID:
AHM59140
UniProt:
A0A0D3LAS3
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All DBs
Position
1092396..1093721
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AA seq
441 aa
AA seq
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MTFENLGLIEPIQQAVESEGYTTPTPIQQQAIPIVLQQKDLFGCAQTGTGKTAAFAIPIL
QLLHEPIRERGQRKIKALILTPTRELAIQVADSFAAYGKNLDLRHLVVFGGVKQKAQTDA
LKAGVDILVATPGRLLDLMNQKFISLEHIKYFVLDEADRMLDMGFIHDIKKVLAKLPAKR
QSLFFSATMPPDILTLANTILVNPAKVEVTPVSSTAERIQQSLYFVSKSDKPSLLAYLLE
EESLESVLVFTRTKHMADRVAKRLHREGIKAEAIHGNKSQNARQRALSNFTNKEIRVLVA
TDIAARGIDVEDLSHVINFDLPNVPETYVHRIGRTGRAGASGSAISFCDAEEVKSLQDIH
KLIGKKIPVVENHPFEADIHVPNRSSNNSSRSQSSYRSQPATASSSHAARNSNQSAPRNN
SQPSPRNSSKRWFGKPRSKNS
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgaaaatctggggctcattgagcctattcaacaggcggtggaatctgaagga
tacaccaccccaacccccatacagcaacaagctattcctattgtacttcagcaaaaagat
cttttcggttgcgcacaaactggcacaggcaaaacagccgcttttgccatccctatttta
cagctgctgcatgaacctatccgggaacgcggccagcgtaaaatcaaagccctgatcctg
acccccacccgtgaactggccatccaggttgccgacagctttgctgcttatggtaaaaac
ctggacctgaggcacctggtggtatttggtggtgtgaagcaaaaagcccagaccgatgcc
ctgaaagccggtgtggatattttagtagccacccccggcaggcttcttgacctgatgaac
caaaagtttatcagcctggagcatattaaatactttgtacttgatgaagccgaccgtatg
ctggatatgggctttatccacgacattaaaaaggtactggccaagctgcctgctaaaaga
caatccctgtttttctcggccaccatgccgcccgatattctgacgcttgccaataccata
ctggttaacccagccaaggtagaggtaactcctgtttcttctaccgcagaaagaattcag
caaagtctgtatttcgtaagcaaaagcgataaaccttccctgctggcctacctgctggag
gaagagtcgctggaaagcgtactggtatttacccgtactaaacacatggccgatcgtgtt
gccaaaagactgcaccgcgagggcattaaggcagaggcaattcacggcaataaatcacag
aatgcccgccagcgtgctctttccaactttaccaataaagaaataagggtactggtggct
accgatattgccgccaggggtatcgatgtggaagatctctcgcatgtgattaacttcgac
ctgcccaatgtgcctgaaacctacgtacaccgcattggcagaacaggccgtgccggtgcc
agcggcagtgccatttcgttttgcgatgccgaggaggtaaaatccctgcaggatatccat
aaactgattggcaaaaaaataccggtggtagagaatcatcctttcgaagctgatatccac
gtgccgaacaggtcatcaaacaactcttcaaggtctcaaagctcttacaggtcacagcct
gcaactgcttcttcctcacatgcagccagaaacagcaaccagtctgcacccaggaacaac
agccagccctcgccccgtaacagcagcaaacgctggtttggcaaaccccgctccaaaaac
agctaa
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