Flammeovirgaceae bacterium: D770_06035
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Entry
D770_06035 CDS
T04058
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fbt
Flammeovirgaceae bacterium
Pathway
fbt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fbt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D770_06035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fbt03019
]
D770_06035
Enzymes [BR:
fbt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D770_06035
Messenger RNA biogenesis [BR:
fbt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D770_06035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_19
AAA_22
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AHM59470
UniProt:
A0A0D3LBS4
LinkDB
All DBs
Position
1415241..1416485
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AA seq
414 aa
AA seq
DB search
MKFDDYPLAPEIKRSLEELGFKKPTDIQYKSIPPIVKGEDVLAIAQTGTGKTAAFAIPVL
HILHEQKKRASREDGIKCIIMVPTRELALQITEVFQNLGKYTRVKTYSIFGGVDQDPQIS
KLEKGFDILVATPGRMFDLVSQGHLKLHRIQILILDEADHMLDLGFLRDIQDLMHVIPRQ
RQTLFFSATINETIKKLAYSLVRNAIRIQISPKDPVAKNINHAVAFVEMDDKRFFLERVI
NENPDKKILVFVRTKVRAERVHKALERMNIRSMTIHGDKEQSDRLQVMQKFRSGEVMVLV
ATDVSARGIDIQGVDYVVNYDLPEQPENYVHRVGRTGRGTQKGQAVSFCSTEEKPILEEI
ESFLDKPIIRMDISKEAYKETLDFTTDVDDNWKALLREQEELEKSGGRKKKKKK
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttgatgattaccccttagccccggaaattaaaagaagcctggaagaactgggc
tttaaaaaacctaccgatatacagtataaatccatcccccccattgtaaagggcgaagat
gtactggccattgcccagactggcaccggcaaaactgctgcctttgccattccggtgctg
cacatcctgcacgagcaaaagaaaagagccagccgggaagatggcattaaatgcatcatc
atggtaccaacccgcgagctggccctgcagattacagaggtatttcagaatttgggcaaa
tacacccgggtaaagacctacagcattttcggtggtgtagatcaggatccgcaaatcagc
aagctggaaaaaggtttcgacatactggtggccacccccggccgtatgttcgacctggta
agccagggccacctgaagctgcaccgcatccagatcctgatcctggatgaagctgaccat
atgctggacctgggctttctgcgagacatacaggacctgatgcacgtaattccacgccag
cggcaaaccttattcttttcggctaccattaacgaaaccatcaaaaagctggcctactcg
ctggtgcgcaacgccattcgtatccagatctcgcccaaagatccggttgccaaaaacatc
aatcatgctgtagcctttgtggagatggacgacaagcgctttttcctggagcgggtgatc
aatgaaaatcccgacaaaaaaatactggtgtttgtgcgcacaaaagtacgggccgagcgg
gtacacaaagccctggagcgcatgaacatcaggagcatgaccatccacggagataaagag
caaagcgatcggctgcaggtgatgcagaagttcaggagcggagaagtaatggtattggtg
gccaccgatgtgagtgcccgcggcatcgatattcagggggtggattatgtggtgaattac
gatttacccgagcagcccgaaaattacgtgcaccgggtagggcgtaccggccggggcacc
cagaaaggacaggcagtctcattctgcagcaccgaggaaaaacccatactggaagaaata
gaaagtttcctggacaagcccatcatccggatggacatcagcaaggaagcctacaaagaa
acccttgattttaccaccgatgtggatgataactggaaagccctgctaagagaacaggaa
gagttggaaaagagtggaggcaggaagaagaaaaaaaagaagtag
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