Flammeovirgaceae bacterium: D770_08350
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Entry
D770_08350 CDS
T04058
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fbt
Flammeovirgaceae bacterium
Pathway
fbt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fbt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D770_08350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fbt03019
]
D770_08350
03400 DNA repair and recombination proteins [BR:
fbt03400
]
D770_08350
Enzymes [BR:
fbt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D770_08350
Messenger RNA biogenesis [BR:
fbt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D770_08350
DNA repair and recombination proteins [BR:
fbt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
D770_08350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
DUF6806
Motif
Other DBs
NCBI-ProteinID:
AHM59933
UniProt:
A0A0D3LDF0
LinkDB
All DBs
Position
1959434..1961617
Genome browser
AA seq
727 aa
AA seq
DB search
MLVDQKDVLKERLKEVFGYDQFRGNQEAIMQNVMDGHNTFVIMPTGAGKSLCYQLPALVQ
KGTAIVISPLIALMKNQVDQLNAHGVQAHFLNSTLSKAEINKVKRETLAGKTKLLYVAPE
SLTKDENIDFLTKADISFVAIDEAHCISEWGHDFRPEYRRIRTIISRLGNLPVIALTATA
TPKVQQDIQKNLEMGDADVFMSSFNRKNLYYEVRPKKHTKKQLVKFVSQHKGKSGIVYCL
SRKKVEEIAELLRVNGFKAAPYHAGLDPAVRIKNQDDFLNEETDIIVATIAFGMGIDKPD
VRFVVHYDTPKSLEGYYQETGRGGRDGLDGHCLMFYSYNDIMKLEKFNKDKPVTERDNAK
ILLQEMASYAESSVCRRRQLLHYFGESFGKDCGFCDNCLNPRERYEAKEHLLLALQAVDQ
TEQRFALQHLAEVIHGTENQYVVSYSHNTLPVWAKGNTYPLDFWKSVIRQALLYEFLEKD
IENIGILKITPKGAEYLINPVSVTFTKDHNYSTDEVEEENEKEAPVAQRAYDEALFSLLK
DLRKKLAKQKNLPPYVIFQDPSLEEMATVYPTSTDALSQIQGVGMGKVSKFGKPFIEAIK
KYVEDNEIEPATDMVVKTSGTRSKTKIFVIQQIDRKIDLKEIAEAQNLSMDELLSEIEHI
CYSGTRLNLDYYLDDYIDEERQDEVYEYFMGAESDSLRLALDELGSNDYTEEELRLMRVK
FLSENAN
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgttagtggaccaaaaggatgtcttgaaagaaaggttaaaggaagtattcggttacgat
cagttcagaggaaatcaggaggctatcatgcagaatgtgatggatggccacaacaccttt
gtgatcatgccaacaggcgcaggtaaatctttatgttaccagctgcccgcacttgtacaa
aagggaacggcaattgtcatttcccccctgattgccctgatgaaaaaccaggtagatcag
ctgaatgcccatggcgtacaggcacacttcctgaattctaccttaagcaaggcagaaata
aataaggtaaaaagagaaaccctggccggcaaaaccaagctgctgtatgtagcgccggaa
tctcttacaaaagacgaaaacatagattttcttacaaaggcagatatttcctttgttgcg
atcgatgaggcacactgtatctcggagtgggggcatgatttccgcccggagtaccgccgt
atccgcaccattatcagcaggctgggcaacctgcccgtcatagccctcaccgccactgcc
accccaaaggtgcagcaggatatccagaaaaacctggagatgggcgatgcggatgtgttc
atgtcttccttcaaccgcaaaaacctctactacgaggtgcggccaaagaaacataccaaa
aaacagctggtaaagtttgtaagtcagcacaaaggcaaatcgggcattgtatactgcctt
agccgtaaaaaggtagaggaaattgccgagctgctgcgggtaaacggctttaaggctgcg
ccctaccatgctggtctggaccctgccgtgcgcatcaagaaccaggacgatttcctgaac
gaggaaaccgacattattgtagcgaccattgcctttggcatgggcatcgacaaacctgat
gtgcgctttgtggtgcactacgatacgcccaagtcgctggagggctactaccaggaaact
ggccgtggcggccgcgatggcctcgacgggcactgcctgatgttctacagctataacgac
atcatgaagctggagaagttcaacaaggacaaaccagtgactgaacgcgacaatgccaag
atcctgctgcaggagatggcttcctatgccgaatcatccgtatgccggcgcaggcagctg
ctgcactattttggtgaatctttcggcaaagactgcggcttttgcgataactgcctgaac
ccacgcgagcgttacgaggcgaaagagcacctcctgctggccctgcaggccgtagaccag
accgaacagcgctttgccctgcagcacctggccgaggtaattcacggtaccgaaaatcaa
tatgtggtgagctacagccacaatacactgcctgtctgggcaaaaggaaacacctatccg
ctcgatttctggaaatcggttatccgccaggccctgctctatgagttcctggagaaggat
attgaaaacattggcattctgaagatcacgccaaagggtgccgaataccttatcaatcct
gtttctgtaacctttacaaaggaccataactacagcacagacgaggtagaggaagaaaac
gagaaagaggcgccggtggcacagcgtgcttatgatgaagccctgttcagcctgctgaaa
gacctgcgtaaaaagctggccaagcagaaaaacctgcctccttacgtgatcttccaggat
ccgtctctggaagaaatggccactgtttaccccaccagtaccgatgccttgagccagatt
cagggtgtgggcatgggaaaggtgagcaagtttggcaaacctttcatagaggctatcaag
aaatatgttgaagacaacgaaatagagcctgctaccgatatggtggtaaaaacctccggt
acacgctcaaaaaccaagatcttcgtaattcagcagattgaccgcaaaattgacctgaag
gaaattgcagaggcgcaaaacctaagcatggacgagctgctctccgagattgagcacatc
tgctactcaggcaccaggcttaatcttgattactacctcgatgattatattgatgaggag
cgtcaggatgaggtgtatgagtattttatgggtgccgaatcggatagtctgcggcttgcc
ctggatgagctgggcagcaacgactataccgaagaagagctccgcctgatgcgggtaaag
tttctgtcggagaatgcgaattag
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