Flammeovirgaceae bacterium: D770_11955
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Entry
D770_11955 CDS
T04058
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
fbt
Flammeovirgaceae bacterium
Pathway
fbt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fbt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D770_11955 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fbt03021
]
D770_11955 (rho)
03019 Messenger RNA biogenesis [BR:
fbt03019
]
D770_11955 (rho)
Transcription machinery [BR:
fbt03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
D770_11955 (rho)
Messenger RNA biogenesis [BR:
fbt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
D770_11955 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
S1CSD-TOTE-2
AAA_25
AAA_22
Mor
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
AHM60648
LinkDB
All DBs
Position
complement(2821005..2823104)
Genome browser
AA seq
699 aa
AA seq
DB search
MYKIEELNLRLLSELKEIAEEMGVKNYKKLPKKELIYKILDQQAVMPENALPKRRAAPPV
PVEEPSTAADSAVEEEEVVVAADDTAVQERSGQDRPGQDRSGGPDKPRKERTGPDRNRSE
KPGPERPRQERERSQDKPDRNQDKAISAEATQDKPGADGAARDGQNKDDQQRQQEEDRRQ
ARIARRVNVTPVEEEPETSVNAEGESTESRPRNQRPRGDDRRGDDRRGGDRRGEDRAEGR
RGGDDRRGDDRRGQDEDQESRRGDAQAERGERTDRRNDRPDRGEGRPDKRERPDRNRDRD
SAPQEADAPVANESRRDANAITPAPVKEFDGIVSSEGVLEIMQDGYGFLRSSDYHYLASP
DDIYVSPSQIKLFNLKTGDTVKGQIRPPKEGEKYFALLRVETINGKTPEEVRDRIGFEHL
TPLFPQEKLRLSTTSGDYSNRILDLFAPIGKGQRGMIVAQPKTGKTVLLKQIANAIAENH
PECYLIILLIDERPEEVTDMARSVKAEVIASTFDEQAERHVKVSSIVLQKAKRMVECGHD
VVILLDSITRLARAYNTVVPSSGKILSGGVDANALHKPKRFFGAARNVENGGSLTIIATA
LIETGSKMDEVIFEEFKGTGNMELQLDRKLSNRRIYPAIDVPASGTRREDLLMDKETLQR
VWILRKFMSDMNSQEAMEFLLERMRGTRDNDEFLVSMNG
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgtacaaaattgaagaactaaatctcaggctactttcggaactgaaagagattgcagag
gaaatgggcgtaaaaaactacaaaaaactgcccaaaaaagaattaatctacaagattttg
gatcagcaggctgtaatgcctgagaatgcccttcccaaaagaagagcagctcctcctgtt
cctgtagaagaaccgtctactgcagcagatagtgctgtagaagaagaggaagtagtagta
gcagcagatgatactgctgttcaggaaagatccggtcaggatagacccggtcaggataga
tccggcggccccgacaagcctcgtaaagagaggactgggccggacaggaacaggtctgag
aaacccggtccggaaaggccccgccaggagcgggagcgtagccaggacaaaccagaccgt
aaccaggacaaagctatttctgctgaagcaacacaggataagcctggtgctgatggtgct
gcccgtgacggacagaacaaagatgatcagcaacgtcagcaggaggaggatcgccgccag
gcaaggattgcccgccgtgtgaacgttacgcctgttgaagaagaacctgaaaccagtgta
aacgcagaaggcgaatcaactgaaagccgtccgcgcaaccagcgtcctcgtggtgatgac
cgccgtggcgacgatcgcagaggtggtgaccgtcgcggtgaagaccgtgcagaaggacgc
cgtggtggagatgaccgtagaggtgatgaccgccgtggacaggacgaagatcaggaaagc
cgccgtggcgatgctcaggcagaacgtggtgaaaggactgaccgtaggaatgatcgcccc
gatcgtggtgaaggacgtcctgacaaacgtgaacgcccggaccgcaaccgcgatcgtgat
tcggcaccacaagaggcagatgcccctgttgccaatgagagccgccgggatgctaatgca
attacacctgcaccggtaaaagaatttgatggtattgtctccagcgaaggggtactggaa
attatgcaggatggctatggctttctgcgctccagcgattaccactaccttgcttctccc
gacgatatctacgtttctccttctcagatcaagcttttcaaccttaaaaccggcgatacg
gtaaaaggtcagattcgcccgccaaaagaaggcgagaaatactttgccctgctgcgcgtg
gaaaccatcaatggcaaaacacctgaagaagtacgcgaccgtattggttttgagcacctt
acgccgctgttcccacaggaaaagcttcgtttaagtaccacctccggcgattacagcaac
cgtatcctcgacctttttgcccctattggcaaaggccagcgtggtatgattgtggcacag
cctaaaaccggtaaaacggtgctgctgaagcaaattgccaatgccattgccgagaatcat
cctgagtgttacctgatcatcctgctgattgacgagcgacctgaagaggttaccgacatg
gcccgcagcgtaaaggcagaggtaattgcctctacttttgatgagcaggcagagcgtcac
gtaaaagtatcgagcattgtattgcaaaaagcaaagagaatggtagagtgcggccacgat
gtggtaattctgctagactccattacgcgccttgcccgtgcttataacaccgtggttcct
tcttccggtaaaattctttccggtggtgtggatgccaacgccctgcacaagccaaagcgt
ttctttggtgcagcccgtaacgtagaaaatggtggttcgcttacaattattgctaccgcc
ctgatcgaaacaggctctaaaatggatgaggtaatctttgaagaattcaaaggtaccggt
aacatggagcttcagctggatcgtaaactttccaaccgccgtatctatcctgcaattgat
gtgcctgcttcaggtacccgccgcgaagatctgctgatggacaaggaaaccctgcagcgt
gtatggatcctgcgcaagtttatgagcgacatgaactctcaggaggccatggagttcctg
cttgaaagaatgcgcggcacccgcgataacgacgagtttctggtatccatgaatggataa
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