Flavobacteriaceae bacterium UJ101: UJ101_00009
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Entry
UJ101_00009 CDS
T04720
Symbol
recQ
Name
(GenBank) DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fbu
Flavobacteriaceae bacterium UJ101
Pathway
fbu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fbu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UJ101_00009 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fbu03019
]
UJ101_00009 (recQ)
03400 DNA repair and recombination proteins [BR:
fbu03400
]
UJ101_00009 (recQ)
Enzymes [BR:
fbu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
UJ101_00009 (recQ)
Messenger RNA biogenesis [BR:
fbu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
UJ101_00009 (recQ)
DNA repair and recombination proteins [BR:
fbu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
UJ101_00009 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
HTH_40
DUF730
Motif
Other DBs
NCBI-ProteinID:
APD05562
UniProt:
A0A1J0LH93
LinkDB
All DBs
Position
6948..9125
Genome browser
AA seq
725 aa
AA seq
DB search
MGLKKELKKYFGFGEFKGKQEEIITSLLEGNDIFVLMPTGGGKSLCYQLPALISDGLAII
VSPLIALMKNQVDVIRGVSENEGIAHVLNSSLSKTETKKVMDDIDSGITKLLFVAPESLT
KEDYVNFLKQYKISFFAIDEAHCISEWGHDFRPEYRNLKDIIHKIGKAPVIALTATATPK
VQEDIQKSLGMQHAKVFKDSFNRANLFYEVRPKINVDKEIVKFIKNNTNKSGIIYCLSRK
KVEEVAQILQVNGVNALPYHAGFDAKTRAKHQDMFLMEDVDVIVATIAFGMGIDKPDVRF
VIHYDIPKSLESYYQETGRAGRDGGEGHCLTFYDYKDIEKLEKFLAGKPVSEREIGMQLL
NEMVAYAETSGSRRKFILHYFGEEFDEINGEGADMDDNMRNPKKKIDVQKEMLILLDVIH
KTNQILKTKELVNTLTGSETAIIKSYKISDEDFFGIGKEHNKHFWTAIIRQALIHDYLKK
EIESYGVIKIIKKGEDFIKNPTPFMMAEDHNYAELQENANTTTPKSTSAFDQVLLDQLKK
IRKKVATQNSIPPFAVFQDLSLDDMATRYPTSLEEIKDIFGVGEGKAKKFGKPFVEFISK
YVEENNIERPDDLVIKQLANNSSHKVYIIQSTDRKLNIEDIAANKGLEMEELIKEMERIV
YQGTKLNIDYYLNEILDEDQQEEIFEYFMEAETDKITDAYHEFDEEFSEEELRFMRIKFL
SEVAN
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
gtgggattaaaaaaagaattaaaaaaatactttggatttggagaattcaaaggaaaacaa
gaagaaataatcacaagtttattagaagggaatgatattttcgtcttgatgcctactgga
gggggaaaatcactatgttatcaacttcctgctttaattagtgatggattagctatcatt
gtatctccattgattgctctaatgaaaaatcaagttgatgtaattcgaggagtatcagaa
aatgagggtatagcacacgttttaaattcatcattatctaaaaccgaaactaaaaaagta
atggatgatattgattcaggaattacaaaattattatttgtagcaccagaatctttaaca
aaagaagattatgtaaacttcttgaaacaatataagatttcattctttgccatcgatgaa
gcccactgtatttcagaatggggtcatgattttagacctgaatatcgtaatcttaaggat
attattcacaaaataggaaaagcacctgtgattgcattaacagcaacagcaacacctaaa
gttcaggaagatattcaaaaaagtttaggaatgcagcatgcaaaagtttttaaagactct
tttaatcgtgctaacttattttacgaagtacgtcctaaaattaatgtagataaggaaatc
gtaaaatttataaaaaataataccaacaaatcagggattatttattgtttgagtagaaaa
aaagtagaagaagttgctcaaatattacaagtaaatggtgtgaatgcattaccttatcat
gctggttttgatgctaaaacacgtgctaaacatcaagacatgttccttatggaagatgtt
gatgtaattgtagcaaccattgcctttggaatgggaattgacaaaccggatgtacgtttt
gtaattcattatgatattccaaagagtttagaaagttattaccaagaaacaggtcgagca
ggtcgtgacggtggtgaaggacattgtcttaccttttacgattataaagatattgaaaag
ttagaaaaattcttggcaggaaaacccgtatctgagagagaaataggtatgcaattatta
aatgaaatggttgcgtatgctgaaacatctggatcacgacgcaaatttattctacattat
tttggagaagaatttgatgaaatcaatggtgaaggtgctgatatggatgataatatgcgt
aatcctaaaaagaaaatcgatgttcaaaaagaaatgttgattttattagatgttatccat
aagactaaccaaattcttaaaacaaaagaactcgttaatactctcacaggaagtgaaaca
gctatcatcaaatcgtataaaattagtgatgaggacttttttgggattggaaaagagcat
aataaacatttttggacggctatcatacgtcaggcattgattcatgactatttgaaaaaa
gaaattgaaagttacggagtaattaaaataattaaaaaaggagaagattttataaagaac
cctactccttttatgatggcagaagaccataattatgcagaattacaagaaaatgccaat
acgactactcctaaatcaacttcagcatttgatcaagttttattagatcagttgaaaaaa
atacgtaaaaaggttgctacacaaaattctattccaccttttgctgtttttcaagattta
agtttagatgatatggccactcgatatcctacgagtcttgaagaaataaaagatatattt
ggtgtaggtgaaggaaaagctaaaaaatttggtaaaccttttgttgaatttatttcaaaa
tatgttgaggaaaataatatagaaaggcctgatgatttagttattaaacaattagcaaat
aattctagtcataaagtttatatcatccaaagtacagaccgaaagcttaatattgaagat
attgcagccaataaagggcttgaaatggaagaattaataaaagaaatggagcgaattgtt
tatcaaggaactaaattgaatattgattactatttgaatgaaattttagacgaagatcaa
caagaagaaattttcgaatattttatggaagctgaaacagataaaattacagatgcttat
catgaatttgatgaagagttttctgaagaagaattacgttttatgcgaatcaaattttta
tctgaagtagccaattaa
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