Flavobacteriaceae bacterium UJ101: UJ101_01705 Help Entry UJ101_01705       CDS       T04720                                  Symbol rpoC Name (GenBank) DNA-directed RNA polymerase   KO K03046   DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] Organism fbu  Flavobacteriaceae bacterium UJ101 Pathway fbu03020   RNA polymerase Brite KEGG Orthology (KO) [BR:fbu00001]  09120 Genetic Information Processing   09121 Transcription    03020 RNA polymerase     UJ101_01705 (rpoC)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:fbu03021]     UJ101_01705 (rpoC)    03400 DNA repair and recombination proteins [BR:fbu03400]     UJ101_01705 (rpoC) Enzymes [BR:fbu01000]  2. Transferases   2.7  Transferring phosphorus-containing groups    2.7.7  Nucleotidyltransferases     2.7.7.6  DNA-directed RNA polymerase      UJ101_01705 (rpoC) Transcription machinery [BR:fbu03021]  Prokaryotic type   Bacterial type    RNA polymerase     Core subunits      UJ101_01705 (rpoC) DNA repair and recombination proteins [BR:fbu03400]  Prokaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     TCR (transcription coupled repair) factors      DNA-directed RNA polymerase complex (RNAP)       UJ101_01705 (rpoC) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C RPOC_hybrid Peptidase_M23 Motif Other DBs NCBI-ProteinID:  APD07216 UniProt:  A0A1J0LLU1 LinkDB All DBs Position 1914730..1919010 Genome browser AA seq 1426 aa AA seqDB search MAVRKQNTPTRFNKITIGLASPESILQKSHGEVLKPETINYRTHKPERDGLFCERIFGPV KDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRIGHINLVVPVAHIWYFRSLPNKIG YILGVPSKKLDMIIYYERYVVIQTGVATRPDGEPLNKMDFLTEEEYLDIMDELPVENQYL EDTDPNKFVAKMGAECIEELLKRIDLDELSYELRHSANNETSKQRRTEALKRLQVVESLR DANRKMENRPEWMVMRVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLME IKAPEVILRNEKRMLQESVDSLFDNTRKSSAVTTDSNRPLKSLSDSLKGKQGRFRQNLLG KRVDYSARSVIVVGPTLKLHECGLPKNMAAELYKPFIVRKLIERGIVKTVKSAKKIIDRK EPVVWDILENVLKGRPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGD QMAVHLPLGPEAILEAQLLMLASHNILNPANGAPVTVPSQDMVLGLYYMTKERTSTETHK VKGEGSAFYSAEEVRIAYNEKAVDLHAKIRVKVDVKENGEFVNKLIETTVGRVLFNDVVP NSVGYINEVLTKKSLRTIIGNILKETDVPTTAQFLDDMKTLGYNNAFEGGLSFSLGDILI PDQKEPMINEAVDQVEGVKSNYNMGLITNNERYNQVIDIWTTTNAKLTDIVMKRMTEDQQ GFNSVYMMLDSGARGSKEQIRQLSGMRGLMAKPQKAGQSGGEIIENPIIANFREGLSILE YFISTHGARKGLADTALKTADAGYLTRRLVDVAQDVIVREEDCGTLRGLTIKPLKKNEEI VEGIAERIVGRVALFDVVNPENDEIIAKANEIITEDMAEAVQAYGIESVEVRSPLTCEAK KGICEKCYGRNLSTNRPVQKGESVGVVAAQSIGEPGTQLTLRTFHVGGTAGNVSEVSSHV AKGDGTIEIEELRTVSSVNEAGDKIEIVVSRSSELKITNDKNNVIMTANIPYGSELLVKN GSKITKDTVICSWDPYNAVIISETAGKIVYENIQQGITYQVEMDDQTGFQEKVISESRNK KLIPTLKIVDKKGEEVKSYNLPVGAHLIVDDGEKIEAGKILVKMPRKSAKAGDITGGLPR VTELFEARNPSNPAVVSEIDGTVSYGKIKRGNREIIIESRTGEIKKYLVKLSSQILVQEN DFVKAGMALSEGVITPRDILNIKGPTAVQEYLVNEIQEVYRLQGVKINDKHFEIIVRQMM RKVEIVDSGDTIFLEGRVVHKQQFIDVNDEIFGKKVVEDAGDSDVFKPGQIVTPRELRDE NSKLKREDKNVVMARDANPATATPILQGITRSSLQTKSFISAASFQETTKVLNEAAVAGY SDELEGLKENVIVGHKIPAGTGLEEYDEIIVGSSREYEEMVSEKTL NT seq 4281 nt NT seq  +upstreamnt  +downstreamnt atggcagttagaaaacaaaatacaccaactcgatttaataaaattacgattggattagca tctccagagtcaattttacaaaaatcacacggagaggttttaaaacctgaaactattaat taccgtacacacaaaccagaacgtgatggtcttttctgtgagcgaatcttcggtcctgta aaagattatgaatgtgcgtgtggtaaatataaaagaattcgctacaaaggaatcgtttgt gaccgatgtggtgttgaagttacggaaaaaaaagtacgtcgtgatcgtattggacacatt aatttagttgtccctgtagcgcatatttggtattttcgttctttaccaaacaaaattgga tatatcttaggagtaccttctaagaaattagatatgattatttactacgaacgttacgta gtaattcaaacaggtgttgcgacgcgtcctgatggagaaccattaaacaaaatggatttc ttaacggaagaagaatacctggatatcatggatgagcttccagttgaaaatcaatattta gaagatacggaccccaataagtttgtcgctaaaatgggtgctgaatgtatcgaagaatta ttgaaaagaatcgatttagatgaattgtcatatgaattacgtcatagtgccaataacgaa acatcgaagcaaagaagaacagaagcattaaaacgtttacaagttgtagaatcattacgt gatgcaaaccgtaaaatggaaaatcgtccagagtggatggtgatgcgtgttgttccggtt attccaccagaattacgcccattagtaccattagatggaggacgttttgctacttctgat ttaaacgatttatacagacgtgttattattcgtaacaaccgtttgaaacgattaatggaa atcaaagcccctgaagtaatcttacgtaatgaaaaacgtatgcttcaagagtcagtagat tccttattcgataatacaagaaaatcatcagccgttacaacggattccaaccgtccttta aaatcattatccgattcattaaaaggaaaacaaggtcgtttccgtcaaaacttattaggt aagcgtgtggattattctgctcgttcggtaattgtagtaggacctactttaaaattacac gaatgtggtttacctaaaaacatggcagctgaattatataaaccattcatcgttcgtaaa ttaatcgaaagaggaattgttaagaccgttaaatctgcgaaaaagattatcgatcgtaaa gagcctgtagtatgggatatcttagaaaatgttctaaaaggacgccctgtattactaaac cgtgctcctacgcttcaccgtttgggtattcaagctttccaaccaaaattaattgaagga aaagcaattcaattacacccattagtgtgtacggcctttaatgccgatttcgatggtgac cagatggcggttcacttacctttaggaccagaagctattttagaagcacaattattaatg ttggcttctcataatatcttaaaccctgctaacggagctccagtaacggttccttctcag gatatggtattagggttatattatatgacaaaagaacgtacttcaacagaaacgcataaa gtgaaaggagaaggttctgcattctattcagcagaagaggttcgaattgcatataatgag aaagcagtagatttacacgcgaaaattcgtgtaaaagtagacgtaaaagaaaacggagaa tttgttaataaattaattgaaacaacggtaggtagagtattgtttaacgatgttgtaccg aactcagttggatatattaatgaagtattgacaaagaaatccttacgtaccattattggt aatatattaaaagaaacggatgttcctacaacggcacagttcttagatgatatgaaaact ttagggtataacaatgcctttgaaggagggttatcatttagtttaggagatattttaatt ccggatcaaaaagaaccgatgattaacgaagctgttgatcaagtagaaggtgtaaaatcc aactataacatgggattaatcaccaacaacgaacgttataaccaagtaattgatatctgg acgacaaccaatgcgaagttaacggatatcgtgatgaagcgtatgacggaagatcaacaa ggatttaactcggtatacatgatgttagattcaggagcccgtggttcgaaagagcagatt cgtcagttatctggtatgcgtggattaatggcaaaaccgcaaaaagcaggtcaatcaggt ggagagattatcgaaaacccgattattgccaacttccgtgaaggattatcgattctagag tactttatttcaacgcacggtgcacgtaaaggtcttgccgataccgcattaaaaacagcc gatgccggttatttaacgcgtcgtttagtagatgtggcacaagacgtaatcgttcgtgaa gaagactgtggtacgttgagaggtttaacgattaagccattaaagaaaaacgaagaaatc gtagaaggaattgctgaacgaattgtaggacgtgtggccttattcgatgtggtgaatcct gagaatgatgaaatcatagctaaagcgaatgaaattattacagaagatatggccgaggca gttcaagcttacggaatagaatctgtagaagttcgttcaccgttaacatgtgaagcgaaa aaaggaatttgtgagaaatgttacggacgtaacttatccacaaaccgtccagtacaaaaa ggggaatccgttggagttgtggcagcacaatcgattggagagccgggtacacagttaacc ttacgtacattccacgtgggaggtaccgcaggtaacgtttcggaagtttcgtctcacgtt gcaaaaggtgatggtacaatcgaaatcgaagaattaagaaccgtttcaagtgttaacgaa gcaggagataaaatcgaaatcgtagtatcgcgttcatctgaattgaagattacaaacgat aagaataatgtgatcatgacggccaatattccttatgggtcagaattgttagtgaaaaac ggttctaagatcacaaaggatacggtaatctgtagttgggatccatataatgccgtaatt atttcagaaacggcaggtaagattgtatacgagaacatccaacaaggtatcacgtaccaa gtagagatggatgatcaaactggattccaagaaaaagtaatttctgaatcacgtaataag aagttaatccctactttaaaaattgtagataaaaaaggagaagaagtaaaatcatataac ttgccagttggagcccatttaattgtagatgatggtgaaaagattgaagcaggtaagatt ttagtgaagatgcctcgtaagtctgcaaaagcaggggatattacgggaggtttaccacgt gtaaccgaattattcgaagcacgtaacccttctaacccagcagtggtttctgaaattgat ggtaccgtttcgtatggtaaaatcaaacgtggtaaccgtgagattatcattgaatcacgt acaggtgagattaagaaatacttggtgaaattatcaagtcagatcttggtacaggagaac gacttcgttaaagcaggtatggctttatctgaaggtgtgattacaccacgtgatatctta aatattaaaggaccaacagcggtacaagaatatttagtaaacgagattcaagaggtatac cgtttacaaggggtgaaaattaacgataagcactttgaaatcatcgtacgtcagatgatg agaaaagtagaaatcgtggattctggagatacgattttcttagaaggaagagtggttcac aaacaacaatttattgatgtgaatgatgaaatctttggtaagaaggtagtagaagacgct ggagactcagatgtattcaaaccaggacaaattgtaacacctcgtgaattgagagatgag aactcgaaattaaaacgtgaagataagaatgttgtgatggcaagagatgcgaatccggca acggctacgccaatcttacaaggaattacgcgttcatctttacaaacaaaatcatttatc tctgcggcatcgttccaggaaacaacgaaagtattgaacgaagcagcagtagcaggttat tcagacgaattagaaggattaaaagaaaacgtaattgttggacataagatccctgcaggt actggtttagaagaatacgatgaaatcattgtaggttctagccgtgagtacgaagaaatg gtaagtgaaaaaacattataa

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