Felis catus (domestic cat): 101083847
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Entry
101083847 CDS
T02385
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
fca
Felis catus (domestic cat)
Pathway
fca03013
Nucleocytoplasmic transport
fca03015
mRNA surveillance pathway
fca03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fca00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101083847 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
101083847 (DDX39B)
03015 mRNA surveillance pathway
101083847 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fca03019
]
101083847 (DDX39B)
03041 Spliceosome [BR:
fca03041
]
101083847 (DDX39B)
Enzymes [BR:
fca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101083847 (DDX39B)
Messenger RNA biogenesis [BR:
fca03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
101083847 (DDX39B)
Spliceosome [BR:
fca03041
]
Complex C
Other components
EJC/TREX
101083847 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
101083847 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
101083847
NCBI-ProteinID:
XP_003985959
UniProt:
A0A2I2U6G2
LinkDB
All DBs
Position
B2:complement(30377837..30389197)
Genome browser
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEEDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaacgatgtggacaatgagctcttggactatgaagaagatgaggtggagaca
gcagcagggggagacggggctgaggcccctgccaagaaggatgtcaagggctcctatgtc
tccattcacagctctggctttcgtgacttcctactgaagccagagttgctccgggccatt
gttgactgtggctttgagcatccgtcagaagtccagcatgagtgcatccctcaggccatt
ttgggaatggatgttctatgccaggccaagtcaggcatgggaaagacagcagtgtttgtg
ctggccacactgcaacagctggagccggttactggacaggtgtctgtgctggtgatgtgt
catactcgggagttggcttttcagatcagcaaggagtatgagcgcttttctaaatacatg
cccaatgtcaaggtcgcggtgttttttggtggtctgtctatcaagaaggatgaagaggtg
ctgaagaagaactgcccgcatatcgtcgtggggacccctggccgcatcctagccctggct
cgaaataagagcctcaatctcaaacacattaaacactttatcttggatgagtgtgataag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccat
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagatccgtccagtctgccgc
aagttcatgcaagacccaatggagatcttcgtggatgatgagacgaagctgacgctgcat
gggttgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaagctctttgac
cttctcgatgtccttgagttcaatcaggtggtgatctttgtgaagtctgtgcagcgttgc
attgccctggcccagcttctagtggagcagaacttcccagccattgccatccaccgaggg
atgccccaggaggagaggctttctcggtatcagcagtttaaagattttcaacgacgaatt
cttgtggccaccaacctatttggccgaggcatggacattgaacgggtgaacattgctttc
aactatgacatgcctgaggattctgacacctacctgcatcgggtggcccgagcaggccgg
tttggcaccaagggcttggccatcacgtttgtgtcagatgaaaacgatgccaagatcctc
aatgatgtgcaggatcgctttgaagtcaatattagtgagctgcctgatgagatagacatt
tcctcctacattgaacagacgcggtag
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