Felis catus (domestic cat): 101088143
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Entry
101088143 CDS
T02385
Symbol
COL5A3
Name
(RefSeq) collagen alpha-3(V) chain isoform X3
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
fca
Felis catus (domestic cat)
Pathway
fca04820
Cytoskeleton in muscle cells
fca04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
fca00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
101088143 (COL5A3)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
101088143 (COL5A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
fca00536
]
101088143 (COL5A3)
Glycosaminoglycan binding proteins [BR:
fca00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101088143 (COL5A3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
101088143
NCBI-ProteinID:
XP_011287273
LinkDB
All DBs
Position
A2:complement(7518991..7554887)
Genome browser
AA seq
1628 aa
AA seq
DB search
MGSRRGLSQPRAGLCLLLASLQLLLRTQAADPVDVLKALGVRGGQAGVSEGPGFCPQRAP
EGDRAFRVGKATTLGIPTWELFPDGHFPENFSVLITLRGQPANQSVLLSIYDEGGARQLG
LALGPALGLLGDSFSPLPQQVNLMDGRWHRVAISVDGRMVTLVADCEPQPPTLGQGPRFI
STAGLTVLGTQDLGEETFEGDIQELLISPDPQAAFQACERYLPGCDNLDPVATGAPQGEP
ETPAPRRRKGKGKGKKKGRGRKGKGRKKKKNKETLTPSLPPGSLENQTSTDIPQTETPAS
TLPPIPTPLVMTTTVTIGHNVTMLEGPLDPDSGTELRTLETKLAKEDKEGGGPTIVPVFR
AAEQPSQTQFQIFSGAGEKGAKGEPAVIEQGQQFEGPPGAPGPRGVVGPSGPPGPPGFPG
DPGLPGPAGLPGIPGIDGIRGLPGTVIMMPFQFASSSLKGPPVSFQQAQAQAVLQQAQLS
MKGPPGPVGLTGRPGPVGLPGYPGQKGEMGEMGPQGPRGLQGPLGPPGREGKMGRSGADG
ARGLPGDTGPKGDRGFDGLPGLPGEKGQRGDFGHVGQPGPPGEDGEKGAEGPPGPTGQAG
EPGPRGLIGPRGSPGPLGRPGVLGIDGAPGAKGNVGPPGEPGPPGQQGNPGSQGLPGPQG
PIGTPGEKGKLGLPGLPGYPGRPGPKGSAGFPGPLGPLGEKGKRGKAGQPGLEGERGPPG
SRGDRGQPGPTGQPGPKGDVGQDGASGIPGEKGLPGLQGPPGFPGPKGPPGPQGKDGRPG
HPGQRGELGFQGQTGPPGPAGVVGPQGKTGEAGPLGERGPPGPPGPPGEQGLPGLEGREG
VKGDLGPPGPLGKEGPPGPRGFPGPQGAPGDPGPIGLKGDKGPLGPVGANGPPGERGPVG
PAGGMGLPGQSGGQGPVGPAGEKGSPGERGSPGPTGKDGIPGPLGLPGPPGAVGPSGEDG
DKGEVGAPGNKGSKGDKGDAGPPGPTGVRGPVGHPGSPGADGAQGRRGPPGLFGQKGDDG
VRGFVGVIGPPGLQGLPGPPGEKGEVGDVGSMGPHGAPGPRGPHGPSGSEGPPGLPGGVG
QPGAVGEKGEPGEAGDPGPPGTPGIPGPKGEIGEKGDSGPSGAAGPPGKKGPPGEDGVKG
NVGPTGLPGDLGPPGDPGVSGIDGSPGEKGDPGDVGGPGPPGASGEPGPPGPPGKRGPSG
RMGPEGKEGEKGAKGEPGPDGPPGMTGPVGARGPPGRVGPEGLRGIPGPVGEPGLLGPPG
MMGPPGPLGPSGLPGLKGDAGPKGEKGHIGLIGLIGPPGEAGEKGDQGLPGVQGPPGPKG
EPGPPGPIGSLGPPGPPGVAGPLGQKGSKGSPGSFGPRGDTGPPGPPGPPGPPAELHGLR
RRRRRSVPLEGPEGGLEEVLASLTSLSFELEQMRRPPGTAERPGLVCSELHRNHPHLPDG
EYWIDPNQGCARDALRVFCNFTAGGETCLYPDKKFETVKMASWSKEKPGNWYSTFRRGKK
FSYVDADGSPVNVVQMTFLKLLSATARQSFTYSCQNSAAWLDEAAGDYGRSLRFLGANGE
EVSFNQTTAATIAVPYDGCRLRKGQTKTLLEFSSSQVGFLPLWDVAATDFGQTNQKFGFE
LGPVCFSS
NT seq
4887 nt
NT seq
+upstream
nt +downstream
nt
atggggagtcgccgaggcctgagccagccgcgggccggcctctgcctgctcctggcctcg
ctgcagcttctgctccggacgcaggccgcagaccctgtggatgtgctgaaggccctgggt
gtgcgagggggccaggctggggtctccgaagggcctggcttctgcccccagagggccccg
gagggtgaccgggcattcagggttggcaaggccaccacacttggcatccctacgtgggag
ctttttccagatgggcactttcccgagaacttttccgtgctgatcactctgcggggccag
ccagccaaccaatctgtccttctgtccatttatgatgagggtggtgctcggcagctgggc
ctggctctggggccagctctgggtctcctaggtgactccttcagccccctcccccagcag
gtcaacctcatggatggcaggtggcaccgtgtggcaatcagtgtggatggcaggatggtg
actctggtggccgactgtgaacctcagccccccacgttgggccaggggcctcgattcatt
agcacggctggactcactgtgttgggaacccaggacctcggggaggagacttttgaggga
gatattcaggagttgctgataagtccagatcctcaggctgccttccaggcctgtgagcgg
taccttcctggctgtgacaacctggaccctgtagccacaggggccccccagggtgagcca
gaaactccagcccctcgacgacgtaaggggaagggaaaagggaagaaaaaagggcgaggt
cgtaaggggaagggcaggaagaagaagaagaacaaggagactttgaccccaagcctacct
cctggctccctggagaaccagacctccactgacatcccccaaacagagacaccagcttca
actttacctccgattcccacacctttggtcatgaccaccactgtgactattggccacaat
gtcaccatgctagaggggcccctggaccctgacagtggaacagaactgaggaccctggag
actaagttagccaaagaagacaaagaaggaggtggccctaccattgtccctgtcttccgg
gcagcagagcagccatcacagactcagttccagattttttctggtgctggagagaaggga
gcaaaaggggaaccagcagtgattgaacagggacagcagtttgagggacctccaggagcc
ccaggaccccgaggagtggtcggcccctcaggccctcccggccccccaggattccctgga
gaccctggtctaccgggtcctgctggcctccctggaatccctggcatcgatggcatccgg
ggtctaccaggcactgtgatcatgatgccgttccagtttgcaagcagctccctcaaagga
cccccagtctccttccagcaagcccaggcgcaggcagtcctgcaacaggctcagctgtct
atgaaaggtcctcctggtccggtggggctcactgggcgcccaggccctgtgggtctccct
gggtatcccggtcagaaaggagagatgggagaaatggggccacagggtccccgaggcctt
cagggacctcttgggccccctggccgggagggaaagatgggccgctctggagcggatggg
gcccggggcctcccaggggacacaggacctaagggtgatcggggctttgacggcctgcca
gggctgcctggtgagaagggccaaaggggtgactttggccatgtggggcaacctggcccc
ccaggagaggatggtgagaagggagcagagggacctccggggcccacaggccaggctggg
gaaccgggcccccgaggactgatcggccctagaggctcccctggtcccctgggacgcccg
ggtgtacttgggattgatggtgctccgggagccaagggaaatgtgggtcctccgggagaa
ccaggccctccaggacagcagggaaatcctggatcccagggactccctggcccccagggg
cccattggcactcctggggagaagggcaagctggggttgccaggtctcccaggttaccca
ggacgtccaggccctaagggatctgctggctttcctgggccgctgggacccttaggagaa
aaagggaagcggggcaaagcggggcagccgggcctggaaggagagcgggggccaccaggc
tcccgtggagacaggggccaaccgggtcccaccgggcaaccgggacccaagggtgacgtg
ggccaggacggggcctctgggatccctggggaaaagggcctcccaggtctgcagggccct
cctggattccccgggccaaagggtccccctggtccccaggggaaggacgggcgtcccggg
caccctggacagagaggagaactgggcttccaaggtcagacaggcccacctggaccagct
ggtgtcgtgggtcctcagggaaagacaggagaagcgggacctctgggcgagaggggcccc
ccaggcccgcctggacccccaggtgaacaaggtcttccgggcctggaaggcagagagggt
gtcaagggagacctggggccacccgggccccttgggaaggaagggccacctggacccagg
ggcttccccggcccccaaggagcccctggtgaccccggacctattggtttaaagggtgac
aaaggccccctgggccctgttggagccaatggccctcctggggagcggggtcctgtgggc
ccggcaggaggcatggggcttcctggccaaagtggaggccaaggccctgttggcccggca
ggcgagaaggggtccccgggcgaacgtggctcccctggccccaccggcaaagatgggatc
ccagggcccctggggcttcctggaccgccgggagctgttgggccttctggcgaggatggg
gacaagggggaagtgggtgcccctggcaacaaagggagcaaaggcgataaaggggatgcg
ggcccgcctggaccaacaggggtacggggtcccgtgggacacccaggctccccgggagca
gatggggctcagggacgcaggggaccaccaggcctctttgggcagaagggagatgatgga
gtgagaggcttcgttggggtgattggcccccctggcctgcagggactgccgggccctcct
ggagagaaaggggaggtcggagatgtagggtccatgggtccccatggagctccaggccct
aggggtccccatggccccagtggatcggagggccctccagggctgcccgggggagttggt
cagccgggcgctgtgggcgagaagggtgagccaggggaggctggagacccaggaccccca
ggaaccccaggcatccctgggcccaagggagaaattggtgaaaagggggactcgggtcca
tctggggctgctggacccccaggcaagaaaggcccccctggagaggatggagtcaaaggg
aacgtgggccccactgggctcccaggagatctaggcccccccggagacccaggagtttcg
ggtatagacggctccccaggagagaaaggagaccctggtgacgttgggggaccgggtccg
cctggagcttctggggagcctgggccccctgggccccccggcaagaggggtccttcaggc
cgcatgggtccagaaggcaaagaaggggagaaaggggccaagggggagccaggtcccgac
gggcccccagggatgacgggcccagtgggggctcgagggccccctggacgtgtggggcct
gagggtcttcgggggatccccggccctgtgggtgaaccaggcctcctgggacctcctgga
atgatgggccctcctggacccctggggccctctggccttccaggattgaagggagatgct
ggccccaagggggaaaaaggccacattggattaattggcctcatcggcccccctggggaa
gctggtgagaaaggggatcaggggttgccaggcgtgcagggcccccccggccccaaggga
gaacccggtccccccggtcccatcggctctctgggcccccctgggcccccaggtgtggcg
ggtcctctgggacagaagggctcaaaaggttccccgggatcctttggtccccgtggcgac
actggcccccctggcccccctggccctccgggtcccccggccgagctgcacgggctgcgc
cggcggcggcggcgctctgtgcccctggagggcccggagggcggcctggaggaggtgctg
gcctcgctcacgtcgctgagcttcgaactggagcagatgcggcgccctcccggcacagct
gagcgcccgggcctcgtatgcagtgaactgcaccgcaaccacccgcacctgccggatggg
gaatactggattgaccccaaccagggctgtgcgcgggacgcgctcagggttttctgcaac
ttcacggctggaggagagacctgcctctatcccgacaagaagtttgagaccgtgaaaatg
gcctcctggtccaaggaaaagccgggaaactggtacagcacattccgtcgagggaagaag
ttctcctacgtggacgctgacgggtctccggtgaacgtggtgcagatgaccttcctgaag
ttgctgagtgccacagcccgccagagcttcacctactcctgccagaactctgccgcctgg
ctggacgaagctgcaggcgactacggccgctccctccgcttcctcggggccaacggggaa
gaggtgtccttcaaccagacgacagcagccaccatcgctgtcccctacgatggctgccgg
ctccgcaagggacagacaaagaccctcttggagttcagctcttcccaagtggggtttctg
cctctgtgggacgtggcggctactgacttcggccagacgaaccagaagtttgggtttgaa
ctgggccctgtctgctttagcagctga
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