Felis catus (domestic cat): 101090197
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Entry
101090197 CDS
T02385
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog isoform X1
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fca
Felis catus (domestic cat)
Brite
KEGG Orthology (KO) [BR:
fca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fca03016
]
101090197 (RTCB)
Enzymes [BR:
fca01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
101090197 (RTCB)
Transfer RNA biogenesis [BR:
fca03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
101090197 (RTCB)
Prokaryotic type
tRNA splicing ligases
101090197 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
101090197
NCBI-ProteinID:
XP_003989261
UniProt:
A0ABI7ZBM5
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All DBs
Position
B4:complement(127272620..127294656)
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLEKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcagctataatgatgagctgcagttcttggaaaagatcaataaaaactgctgg
agaatcaagaagggcttcgtgcccaacatgcaggttgaaggagttttctatgtgaatgat
gctctggaaaaattaatgtttgaggaattaagaaatgcctgtcgaggtggtggtgttggt
ggcttcctgccagccatgaaacaaattggcaatgtggcagccctgcctgggattgttcat
cgatctattgggcttcctgatgtccactcaggttatgggtttgctattgggaacatggca
gccttcgatatgaatgaccccgaagcagtggtatccccaggtggtgtcggatttgacatc
aactgcggtgtccgcttgctcagaaccaatttagatgaaagcgatgtccagccagtgaag
gagcagcttgcccaggctatgtttgaccacattcctgttggggtgggatcaaaaggtgtc
atccccatgaatgccaaagacttggaggaggccttggagatgggtgtggactggtccctg
agggaaggctacgcctgggctgaagacaaggagcactgtgaggagtacggaaggatgttg
caggccgatcccaataaggtctccgcaagggctaagaaaagaggccttcctcagttgggg
accctgggagcaggaaaccactatgcagaaatccaggttgtggatgagattttcaatgag
tacgctgctaagaaaatgggcattgaccataagggacaggtgtgtgtgatgatccacagc
ggaagcagaggcttgggccaccaagtagccacagatgcactggttgctatggaaaaagcc
atgaagagagacaagatcatagtcaacgaccggcaattggcttgtgctcggatcgcttcc
ccagagggtcaggactacctgaagggaatggcagctgctgggaactatgcctgggtcaac
cgctcttccatgaccttcttaacccgtcaggcttttgccaaggtcttcaacacaactcct
gatgacttggacctacatgtgatctatgatgtttctcacaatattgccaaagtcgaacag
cacgtggtggatggaaaggaacggacactgttggtgcacaggaagggatccacccgagct
tttcctcctcaccatccccttattgctgttgattaccaactcactggacaaccagtgctc
attggtggcaccatgggcacctgtagttacgttcttactggcactgaacagggcatgact
gagaccttcggaacaacttgtcatggagcgggccgtgcattatcccgagcaaaatcccga
cgtaatttagatttccaggatgtcttggacaaactggcagatatgggaatcgcaatccgc
gttgcctcgcccaaactggttatggaagaggctcctgagtcctacaagaatgtgaccgac
gtggtgaacacctgccatgatgctgggatcagcaagaaggccattaaactgagaccaatt
gccgtgatcaaaggatag
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