Felis catus (domestic cat): 101091111
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Entry
101091111 CDS
T02385
Name
(RefSeq) LOW QUALITY PROTEIN: spliceosome RNA helicase DDX39B-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
fca
Felis catus (domestic cat)
Pathway
fca03013
Nucleocytoplasmic transport
fca03015
mRNA surveillance pathway
fca03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fca00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101091111
09122 Translation
03013 Nucleocytoplasmic transport
101091111
03015 mRNA surveillance pathway
101091111
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fca03019
]
101091111
03041 Spliceosome [BR:
fca03041
]
101091111
Enzymes [BR:
fca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101091111
Messenger RNA biogenesis [BR:
fca03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
101091111
Spliceosome [BR:
fca03041
]
Complex C
Other components
EJC/TREX
101091111
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
101091111
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
DUF6423
Motif
Other DBs
NCBI-GeneID:
101091111
NCBI-ProteinID:
XP_044913562
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All DBs
Position
B2:45078702..45080011
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AA seq
426 aa
AA seq
DB search
MAENDVDNELLDYEDEVETAAGGDGAEAPAKKDVKDSYVSIHSSGFRDFLLKPELLWAIV
DCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLDTLQQPEPVTRQVSVLVMCH
TRELALQISKEYERFSKYMPNVKVTVFFGGXIKKDEEVLKKNCLHIIVGTPGRILALARN
KSLNLKHIKHFILDECDKMLEQLDMRQDVQEIFRMTPDEKQVMMFSATLSKEIRPVCRKF
MQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIA
LAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRXILVATNLCGRGMDIERVNIAFNS
DMPEDSDTYLRQVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNIRDLPDETDISS
YIEQTR
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaatgatgtggacaatgagctcttggactatgaagatgaggtggagacagca
gcagggggagacggggctgaggcccctgccaagaaggatgtcaaggactcctatgtctcc
atccacagctctggctttcgtgacttcctactgaagccagagttgctctgggccattgtt
gactgtggctttgagcatccatcagaagtccagcatgagtgcatccctcaggccattttg
ggaatggacattctatgccaggccaagtcaggcatgggaaagacagcagtgtttgtgctg
gacacactgcaacagccggagccagttactagacaggtgtctgtgctggtgatgtgtcac
actcgggagttggctcttcagatcagtaaggagtacgagcgcttctctaaatacatgccc
aatgtcaaggtcacggtgttttttggtggtnctatcaagaaggatgaagaggtgctgaag
aagaactgcttgcatatcatcgtggggacccctggccgcatcctagctctggctcgaaat
aagagcctcaatctcaaacacattaaacactttatcttggatgaatgtgataagatgctt
gaacagctcgacatgcgtcaggacgtccaggaaatttttcgcatgacccccgatgagaag
caggtcatgatgttcagtgctaccttgagcaaagagatccgtccagtctgccgcaagttc
atgcaagacccaatggagatcttcgtggatgatgagacgaagctgacgctgcatgggttg
cagcagtactatgtgaaactgaaggacaacgagaagaaccggaagctctttgaccttctc
gatgtccttgagttcaatcaggtggtgatctttgtgaagtctgtgcagcgttgcattgcc
ctggcccagcttctagtggagcagaacttcccagccattgccatccaccgagggatgccc
caggaggagaggctttctcggtatcagcagtttaaagattttcaacgatgaattcttgtg
gccaccaacctatgtggccgaggcatggacattgaacgggtgaacattgccttcaactct
gacatgcctgaggattctgacacctacctgcgtcaggtggcccgagcaggccggtttggc
accaagggcttggccatcacgtttgtgtcagatgaaaacgacgccaagatcctcaatgac
gtgcaggatcgctttgaagtcaatattcgtgacctgccagacgagacagacatttcctcc
tacattgaacagacacggtag
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