Felis catus (domestic cat): 101093271
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Entry
101093271 CDS
T02385
Symbol
SKIV2L
Name
(RefSeq) helicase SKI2W isoform X2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
fca
Felis catus (domestic cat)
Pathway
fca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101093271 (SKIV2L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fca03019
]
101093271 (SKIV2L)
Enzymes [BR:
fca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101093271 (SKIV2L)
Messenger RNA biogenesis [BR:
fca03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
101093271 (SKIV2L)
mRNA degradation factors
3'-5' decay
Ski complex
101093271 (SKIV2L)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
HAS-barrel
DUF3516
Motif
Other DBs
NCBI-GeneID:
101093271
NCBI-ProteinID:
XP_003986001
LinkDB
All DBs
Position
B2:30757977..30769326
Genome browser
AA seq
1246 aa
AA seq
DB search
MMETERLVLPPPDPLDLPLRPVELGCTGHWELLNVPGAPESTLPHGLPPCAPDLQQETEQ
LFLSSPAWLPLHGVEHSARKWQRKMDPWSLLATLGAPVPSDLQAQRHPTTGQILGYKEVL
LENTNLSATTSLSLRRPPGPVSQSLWGNPTQYPFWPGGMDEPTITDLSTREEAEEEIDFE
KDLLTVPPGFKKGVDFAPKDHLAPAPGLLSLSRLLEPLDLGGGDEDESETVGQPGIPRGD
TVSAPPCSPSLARASSLEDLVLKEASTAESPPEPPKPLPQEQWAIPVDVTSPVGDFYRLI
PQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTS
PIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWV
IFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVIST
VARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQ
PTHQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEI
HLFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLF
ATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCK
GRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSK
AHEQALAELTKRLGTLEEPDTTGQLVDLPEYYSWGEELTETRSLIQRRIMESVNGLKSLS
AGRVVVVKNQEYHNTLGVILQVSSNSTSRVFTTLILCDKPVSEDPQERASATPDVPYPDD
LVGFKLFLPEGPCDHTVAKLQPGDMAAITTKVLRVNGEKILEDFSKRQQPKFKKDPPIAA
VTTAVQELLRLAQAYPAGPPTLDPVNDLQLKDVSVVEGGLRARKLEELIWGAQCVHSPRF
SAQYLKLQERMQIQKEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEAGTVKLAGRV
ACAMSSHELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDPGEQLPSTLKQGVERVRA
VAKRIGEVQVACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCI
QRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgatggagacggagcgacttgtgctgcctcctccagatcccttggatctgccccttcgg
cctgtggagctgggatgcacagggcactgggagctgctgaatgtgcctggggctccagag
agcacacttccccacggcctccctccctgtgcccccgatctgcagcaggaaacagagcag
ttgtttttatcatctccagcctggttgcctctgcatggtgtggagcactcagcccgaaaa
tggcagaggaagatggatccctggtccctcctggccacactgggggcccctgtcccctca
gaccttcaggcccaaagacacccaaccacaggccagatactgggctacaaagaggtcctg
ctggagaatacaaacctatcggccaccacctccttgtctcttcgccggcccccagggccc
gtctcccagtccctgtgggggaatccaacacaataccctttctggccaggtggaatggat
gagcctaccataacagatctgagcactcgggaggaggctgaggaagagatagactttgag
aaagatcttcttactgtcccacctggcttcaagaaaggtgtggactttgcaccgaaggat
cacctggctccagctcccggcttgctcagcctcagccgtttgctggaacctctggatttg
ggggggggcgatgaggatgagagtgagacagtgggccagccaggaattcccagaggagac
actgtttcagcacccccctgcagtccttccctggcccgagcaagcagcttggaggaccta
gtgttgaaggaagcatccacagctgaatcccccccagagccccccaaacccctgcctcag
gagcagtgggctattcccgtggatgtcacctcccctgttggtgatttctaccgcctcatt
ccccagcctgctttccagtgggcatttgagccagatgtgtttcagaaacaggccatcttg
cacctggagcggcatgactctgtctttgtagcagctcacacatctgcggggaagacggtt
gtggctgaatatgccattgcccttgcccagaaacacatgacacgcaccatctacacttcg
cccatcaaggccctgagcaaccagaagttccgagactttcgaaacactttcggagatgtg
gggctgctcactggggacgtacagctgcacccggaggcctcctgcctcattatgacgaca
gagatccttcgctccatgctgtacagcggttcagatgtcatccgggacctagagtgggtc
atctttgatgaggttcactacatcaacgatgctgagcgtggggttgtatgggaggaagtg
cttatcatgctccctgaccatgtctccatcatccttctgagtgctaccgtccccaatgcc
cttgagttcgctgactggatcgggcgactgaaacggcgccagatctatgtgatcagcact
gttgcccgtcccgtacccctggagcattatctcttcacagggaacagccccaagacccag
ggggagctctttctgttgctggactcccgaggtgccttccacacaaaggggtactatgca
gctgtggaggccaagaaggagcggatgagcaaacatgcccagacctttggggccaaacag
cccacgcatcagggggggcctgcacaggaccgcggtgtgtacctatccctcctggcctcc
ctccgcacccgtgcacagctgcctgtggtcgtgttcaccttctcgcggggtcgctgtgat
gagcaagcctcgggcctcacctccctggacctcaccacaagttcagagaagagtgaaatt
cacctcttcctgcagcgctgccttgctcgcctccgtggctctgaccgccagctgccccag
gtcctgcacatgtctgagctcctgcaccgtggcctgggtgtgcaccacagtggcatcctg
cccattcttaaggagatcgtggagatgcttttcagtcgaggcctggtcaaggtcttgttt
gctacggagacctttgccatgggtgttaatatgcctgctcgaacagtggtgtttgactct
atgcggaaacacgatggctccaccttccgggatctgctacctggagagtatgtgcagatg
gcaggtcgggcaggccggaggggcctggaccccaccggcactgtcatcctgctctgcaag
ggccgtgtgcctgagatggcagacctgcaccgcatgatgatgggaaagccatcgcagctg
caatctcagttccgcctcacatacaccatgatcctgaacctgctgcgggtggacgccctc
agggtggaagacatgatgaagaggagcttctccgagtttccatcccgcaaggacagcaag
gcccatgaacaggctctagctgaactgaccaagagactagggaccttagaggaacctgat
acgactggccaactggttgacctgcctgagtattacagctggggggaggaactgacagag
acccggagcctgatccagcgacgcatcatggagtctgtgaatgggctgaaatctctctca
gcaggaagggtggtggttgtgaagaatcaggagtatcataacacattgggtgttatcttg
caggtctcctcaaattccaccagcagggtgtttacaaccctgatcttgtgtgataagcct
gtgtctgaggacccacaggagagggcatcagccaccccagatgtgccctacccagatgac
cttgtgggattcaagctgttcctgcctgaagggccctgtgaccacacagtggccaagctc
cagccaggagacatggctgccatcaccaccaaggtgctccgggtgaatggggaaaagatc
ttggaggacttcagcaagaggcagcaaccaaaattcaagaaggatcctcccattgcggct
gtgaccactgctgtccaggaactgctgcgtttggctcaggcctacccagcgggaccccct
acccttgaccctgtcaatgacctgcagctcaaggatgtgtcagtggttgagggagggctc
cgggcccggaagctggaggagctgatctggggggctcagtgtgtgcacagtccccgtttc
tctgcccagtacctgaagctgcaggagcgaatgcagatacagaaggagatggagcgacta
cgtttcctgctgtcagatcagtcactgttgctgctcccagagtatcaccagcgagtagag
gtgctcagaaccctgggttatgtagacgaggcaggcaccgtgaagctggcagggcgggtg
gcttgtgccatgagcagtcacgagctgcttctcactgagctcatgtttgacaacgctctg
agtgccctgcggccagaagagattgcagccctgctctctggcctggtctgccagagccct
ggggaccctggggagcagctcccaagcaccctcaaacagggagtggaacgtgtccgggcc
gtggccaagcggattggtgaggtccaggtggcctgtggcctgaaccagactgtggaggaa
tttgtcggggagctgaattttgggctggtagaggtggtgtacgagtgggcccggggcatg
cccttctctgagttggcagggctgtcggggactcctgagggcctggtggtccgttgcatc
cagcgcttggccgagatgtgtcgctcgctgaggggggcggcccgcctggtaggagaacct
gtgctaggtgccaagatggagacggcagctactttgctgcggagggacatcgtctttgca
gccagcctatacactcagtga
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integrated database retrieval system
