KEGG   Felis catus (domestic cat): 101094774
Entry
101094774         CDS       T02385                                 
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
fca  Felis catus (domestic cat)
Pathway
fca03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:fca00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101094774 (SNRNP40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:fca03041]
    101094774 (SNRNP40)
Spliceosome [BR:fca03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    101094774 (SNRNP40)
 Complex C
   U5 SnRNP specific factors
    101094774 (SNRNP40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_TEP1_2nd WD40_CDC20-Fz WD40_WDHD1_1st EIF3I Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th Beta-prop_SCAP WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_DCAF4 Beta-prop_RIG_2nd WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_WDR75_2nd Beta-prop_WDR19_1st Beta-prop_Vps41 eIF2A Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Beta-prop_RIG_1st Cytochrom_D1 WD40_like WDR54 Beta-prop_Nup120_160
Other DBs
NCBI-GeneID: 101094774
NCBI-ProteinID: XP_011283059
UniProt: M3W1R3
LinkDB
Position
C1:complement(23593237..23626924)
AA seq 358 aa
MIEQQKRKGPELPLVPVKRQRHELLLGAAGSGPGAGQQQTAPGALLQAGPPRCSSLQAPI
MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT
DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW
DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT
GLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK
IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRLYMGEIQ
NT seq 1077 nt   +upstreamnt  +downstreamnt
atgatagaacagcagaagcgcaagggcccagagttgccgctggtaccagtcaaacggcag
cggcatgagttgctgttgggagcggcggggtcgggccccggagctgggcagcagcagacg
gcgccgggagctttgctgcaagcgggacctcccaggtgttcctcccttcaagctccaatc
atgcttctctcaggacatgaaggggaagtgtactgctgcaagtttcatcccaacggatcc
accttagcgtctgcaggattcgatcgactgatattgctgtggaatgtctatggtgactgt
gataactatgccacattgaagggacacagtggggcggtgatggagctgcattataatacc
gatggcagtatgctcttctccgcatccacagataaaactgtggcagtatgggacagtgag
acaggcgagagggttaaaaggctgaaaggacatacttcctttgtgaattcctgttaccca
gccaggaggggcccccagcttgtctgcactggcagtgatgatggtacagttaagctttgg
gacatccggaagaaagcagccatccagacatttcagaacacctaccaggtgttagctgtg
accttcaatgacacaagtgatcagattatttctgggggaatagacaatgatatcaaggtc
tgggacttgcgccaaaacaagctcacctacaccatgagaggccatgcggattcagtgacg
ggcctgagtttaagttctgaaggctcttatctcttgtccaatgcaatggacaatacagtg
cgggtctgggatgtccggccatttgctcccaaagagaggtgtgtgaagatttttcaagga
aatgtgcacaactttgaaaagaatctcctgagatgttcttggtcacctgatggaagcaag
atagcagctggttcagctgacaggtttgtgtatgtgtgggatacgacaagcaggaggatt
ttgtataagctgcctggacacgctggctccatcaatgaagtggctttccaccccgatgaa
cccatcattctgtcagcgtccagtgacaagagactgtatatgggggagattcagtga

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