Felis catus (domestic cat): 101096043
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Entry
101096043 CDS
T02385
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
fca
Felis catus (domestic cat)
Pathway
fca03013
Nucleocytoplasmic transport
fca03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
fca00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101096043 (UPF1)
03015 mRNA surveillance pathway
101096043 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fca03019
]
101096043 (UPF1)
Enzymes [BR:
fca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
101096043 (UPF1)
5.6.2.5 RNA 5'-3' helicase
101096043 (UPF1)
Messenger RNA biogenesis [BR:
fca03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
101096043 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
101096043 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
101096043
NCBI-ProteinID:
XP_023103431
LinkDB
All DBs
Position
A2:14054583..14092212
Genome browser
AA seq
1130 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGAG
GPVGAGAGAAAGQLDAQVGGPEGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLP
VHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGET
VLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFL
SWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDA
YQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVI
IWLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHN
FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGL
PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVD
QLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELS
SADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMV
PVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPAL
SAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRT
EAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDA
FQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHL
LNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYD
RSSQGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGR
GTPKGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMS
QPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggcccagttcgcagacgctcaccttcctggacactgaggaa
gccgagctgcttggcgccgacacacagggctcggagttcgagttcaccgacttcaccctc
cccagccagacgcagacgcccccaggtggccccggcggccccggaggaggtggtgcggga
ggcccggtcggcgctggcgcgggcgctgcggccggacagctggacgcgcaggtcggtgga
ccagagggcattctgcagaatggggctgtggatgacaatgtggccaagaccagccagctg
ttggccgagttgaactttgaagaagatgaagaagatacctattacacaaaggatctccct
gtacatgcctgcagttactgcggaatacacgatcctgcttgcgtggtttactgtaatacc
agcaagaagtggttctgtaatggacgtggaaatacttctggcagccacattgtaaatcac
ctcgtgagggcaaaatgcaaagaggtgactctgcacaaggatgggcccctgggggagaca
gttctggagtgttacaactgtggctgccgcaatgtcttcctcctcggcttcatccctgcc
aaagcggactccgtagtggtgctcctgtgcaggcagccctgcgccagtcagagcagcctc
aaggacatcaactgggacagctcccagtggcagcccctgatccaggaccgctgcttcctc
tcttggctggtcaagatcccttctgagcaggagcagctgcgggcccggcagatcactgct
cagcagatcaacaagctagaggaactctggaaggaaaatccttctgccaccttggaggat
ctggagaagcccggtgtggatgaggagccgcagcacgtcctcttgcggtatgaggacgcc
taccagtaccagaacatattcggccctctggtcaagctggaggccgactacgataagaaa
ctgaaagagtcccagactcaagataacatcacggtcaggtgggacctgggccttaacaag
aagagaatcgcctacttcactttgcccaagactgactctggtaatgaggatttagtcata
atttggttaagagacatgcggctcatgcagggagatgagatatgcctgagatacaaaggg
gatctggcacccctgtggaaagggatcggccacgtcatcaaggtccctgataattatggc
gatgagatcgccattgagcttcggagcagtgtgggcgcccctgtggaggtgactcacaac
ttccaggtggatttcgtgtggaagtcaacctcatttgataggatgcagagcgctttgaaa
acgtttgctgtggatgagacctccgtgtcaggctacatctaccacaaactgctcggccac
gaggtggaggatgtgatcatcaagtgccagctgccgaaacgcttcacggcacaggggctc
ccagacctcaaccactctcaggtttacgctgtgaagactgtgctgcagagaccactgagc
ctgattcaggggccaccgggcacggggaagaccgtgacctctgccaccatcgtctaccac
ctggctcggcagggcaacgggcctgtgctcgtctgtgctccgagtaacatagctgtggat
cagctgactgagaagatccaccagactgggctgaaagtcgtgcggctctgcgcgaagagc
cgtgaggccattgattccccggtgtcattcctggccctgcacaaccagatcaggaacatg
gatagcatgcccgagctacagaagctgcagcagctgaaggacgagactggggagctgtcc
tctgccgatgagaagcggtaccgggccctgaagcgcaccgccgagcgggagctgctcatg
aatgcagatgtcatctgctgcacgtgtgtgggtgcaggggacccgaggctcgccaagatg
cagttccgctccatcttaattgacgagagcacccaggccaccgaaccagagtgcatggtc
cctgtggttcttggcgccaagcagctcatcctcgtgggcgaccactgccagctgggccct
gtggtgatgtgcaagaaggccgccaaggctggactgtcccagtcgctcttcgagcgcctg
gtggtgctgggcatccgtcccatccgcctccaggtccagtatcggatgcacccagcgctc
agtgccttcccgtccaacatcttctacgagggctctcttcagaacggcgtcaccgcagcg
gatcgagtgaagaaggggtttgacttccagtggccccagcctgataagccaatgttcttc
tacgtgacccagggccaagaggagatcgccagctcaggcacctcctaccttaacaggacg
gaagctgcaaatgtggagaagatcaccacgaagctgctaaaggcgggtgccaagcctgac
cagatcggcatcatcacgccctatgagggccagcgctcctacctggtgcagtacatgcag
ttcagcggctccttgcacaccaagctctaccaggaggtggagattgccagtgtggatgcg
ttccagggacgagagaaggacttcatcattctttcctgtgtgcgagccaacgagcaccaa
ggcattgggtttttaaacgaccccaggcggcttaatgtggctctgactagagcaaggtat
ggggtcattatcgtgggcaacccaaaggccttgtccaagcagccactctggaaccatctg
ctgaactactacaaggagcagaaggtgctggtggaggggcccttgaacaaccttcgggag
agcctcatgcagttcagcaagcccaggaagctggtcaacaccatcaacccgggagcccgc
ttcatgacaacagccatgtatgatgctcgggaggccattatcccaggatcagtctatgat
cggagcagccagggccggccctcaaacatgtacttccagacccacgaccagatcggcatg
atcagtgcgggacccagccacgtggctgccatgaacattcccatccctttcaacctggtc
atgccacccatgccaccaccagggtattttggacaagccaacgggccagccgcaggccgg
ggtaccccaaaaggcaagactggtcgtggggggcgccagaagaaccgctttgggctccct
ggacccagccagacgaatctccccaacagccaggccagccaggatgtggcatcacagccc
ttctcccagggcgccctgacacagggctacatctccatgagccagccctcccagatgagc
cagcccggcctctcccagcccgagctgtcccaggacagttaccttggcgatgagtttaag
tcacagattgatgtggcgctgtcgcaagactccacgtaccaaggggagcgggcgtaccag
cacggcggagtgacagggctgtcccagtactag
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