Felis catus (domestic cat): 101097241
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Entry
101097241 CDS
T02385
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1 isoform X5
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
fca
Felis catus (domestic cat)
Pathway
fca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101097241 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fca03019
]
101097241 (PNLDC1)
Enzymes [BR:
fca01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
101097241 (PNLDC1)
Messenger RNA biogenesis [BR:
fca03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
101097241 (PNLDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
101097241
NCBI-ProteinID:
XP_011280854
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All DBs
Position
B2:143516187..143534479
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AA seq
531 aa
AA seq
DB search
MDVGADEFEQSLPLLQELVLGADFVGLDIEFTGLRSNQSRPQQISLFDLPSEWYLKTRQS
VQQFTICQIGLSVFSSIEGESNKYVAHSCNFFLFPTTFGVLDSEFSFQASSVQFLNQYGF
DYNKFLKNGIPYMNEEQEKKIKHNILTGNWKVRSSLDKDQIKVVIDEVTRWLDLAEEGDW
MTLPGIAGFQAFEIQLVLRQALPNIWTVLRDQGIIVKKVSKQHRWYLENTSCDRESCWKE
KILLSARGFSVFFQMLVKAQKPLVGHNMMTDLLHLHEKFFRPLPESYDQFKLNIHNLFPV
LIDTKNVTKDIWKELNFPRVSNLSEVYEVLNSDLNPTKNSGPVIIHASKCEKYAETKYPH
EAAYDAFLCGSVLLKVAHLLLWRVHGAGSLPELSFPLYLDVLAPYVNQVNLIRAGVPKIN
FSGPDYPSIRPPILLLSVRRWPGVSEQQVYREFQNLCKFDVRRLSRSQFLLLTNKFKDAR
SILREYRGHPTLQISLYRYWRHSPDINCLLQVCGVVATWALLALVLGRPDP
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgggcgccgacgagttcgagcagagcctccctctgctgcaggagctcgtcctg
ggcgcggacttcgtgggtctggacatagagttcacgggccttcgttctaaccagtcccgg
ccccagcagatcagcctgttcgacctgccctcggagtggtatctaaagacccgtcagagt
gttcagcaattcacaatctgtcagattggattgtctgtgttttccagtattgaaggagag
tcaaacaagtatgtagcccattcgtgtaacttctttctcttccccacgacgtttggggtt
ttggattcggagttctctttccaggcttccagtgtccagtttctgaatcagtatggcttc
gactacaacaagtttctcaaaaacgggatcccatatatgaatgaagaacaggagaagaaa
atcaaacacaacatcctgaccgggaactggaaagttcgcagttctctggataaagaccag
atcaaggtggtgattgatgaggtgacacggtggctggacctggcggaggagggcgactgg
atgactctccctggtattgctggcttccaggcctttgagatccagctggtgctgaggcag
gccctccccaacatctggacggtcctgagagaccaggggataatagtgaaaaaagtgagc
aaacagcatcgctggtaccttgagaacacctcctgcgatcgagagagctgttggaaggag
aagattcttctctccgcgaggggtttttctgtgtttttccagatgctggtgaaagcccag
aagcccttggtgggccacaacatgatgacagacctactgcatctgcacgagaagttcttc
cggccgctcccagaaagctatgatcaatttaagctgaatatccacaacctatttcctgtt
ctcattgacaccaagaatgtgacaaaggacatctggaaggaactgaatttcccaagggtt
tcaaatctctcagaagtttatgaagtcctaaacagtgacttgaatcctaccaaaaattcc
gggccagtgattattcatgcaagcaagtgcgaaaaatacgctgagaccaagtacccccac
gaggctgcgtatgatgctttcctctgtggctcagttcttctgaaagtggcacatttgctc
ctgtggagagtacatggagctggctccctgcctgagctgtccttccctctgtacctcgat
gtgctggctccctatgtgaaccaggtgaatcttatccgagccggggtccctaagatcaac
ttttctggtccagattaccccagtatccgacctcccatcctcctcctcagcgtccggagg
tggcctggggtcagcgagcagcaagtgtatcgtgagtttcagaatctctgcaagttcgat
gtccggcgactgtcgcggagccagttcctgctcttgaccaataagttcaaggacgctcgg
agcatcctgagggagtaccggggccaccccaccctgcagatctccctctatcggtactgg
agacactcccccgacatcaactgcttgttacaggtctgtggcgtggtggccacctgggcc
ctcctcgctctcgtccttggaagacctgacccctga
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