Felis catus (domestic cat): 101100021
Help
Entry
101100021 CDS
T02385
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
fca
Felis catus (domestic cat)
Pathway
fca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101100021 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fca03019
]
101100021 (PARN)
Enzymes [BR:
fca01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
101100021 (PARN)
Messenger RNA biogenesis [BR:
fca03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
101100021 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
T6PP_C
NCBP3
RRM_1
Motif
Other DBs
NCBI-GeneID:
101100021
NCBI-ProteinID:
XP_023102803
UniProt:
A0A337S613
LinkDB
All DBs
Position
E3:28998125..29165348
Genome browser
AA seq
638 aa
AA seq
DB search
MEIIRSNFKSNLQKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRLQSNGAGTLSYVSPNASKCPVTIPEDQKKF
IDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIV
ISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQF
YCPLPADLNEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKV
ESAEGFPSYDTATEQLHEAGYDAYITGLCFLSMANYLGSFLSPPKIHVSARSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTS
AFVSLSQPEQVQIAVNTSKYAESYRIQTYADYVGKKHEEKQIKRKWTEDSWKEVERKRLN
TQCISYALQNHYHHANSLTSTSTVGKRNLSPSPAEADLETRISGEISDTELEQTESCAES
LSEGRKKAKKLKRMKKELSPAGGLPGSPAKLFEVPDTW
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggagataatcaggagcaattttaagagtaatcttcaaaaagtgtaccaggccatagag
gaggccgacttcttcgccatcgatggggagttttcaggaatcagtgatggaccttcagtc
actgcattaacaaatggttttgacactccagaagaaaggtatcagaagcttaaaaaacat
tccatggactttttgctgtttcagtttggcctttgcacttttaagtatgactacacagat
tcaaagtatataacgaagtcatttaacttctatgttttcccgaaacccttcaatagatcc
tcgccagatgtcaagtttgtttgtcagagctcaagcattgactttctagcaagccaagga
tttgattttaataaagtttttcgcaatggaattccctatttaaatcaggaagaagaaaga
cagttaagggagcagtatgatgaaaaacgcctacagtccaatggtgcaggaactctgtct
tacgtatctcccaacgcgtcaaaatgtcctgtgacgattcctgaggatcagaagaagttt
attgaccaagtggtagagaaaattgaagatttattacaaagtgaagaaaacaagaacttg
gatttagagccatgtactgggttccaaagaaaactaatttatcagactttgagctggaag
tatcccaaaggcattcacgttgagactttagaaactgaaaagaaggagcgatacatcgtc
atcagcaaagtagatgaagaggaacgtaaaaggagggagcagcagaaacacgctaaagaa
caggaagaactgaatgacgctgtgggattttctagagttattcatgccattgccaattcg
ggaaaactcgtcattggacacaatatgctcttggatgtcatgcacacggttcatcaattc
tactgccctctgcctgcggacttaaatgagtttaaggagatgacaacatgtgttttcccc
agactcttggatacaaaattgatggccagcacacaaccttttaaggatatcattaacaac
acatctcttgcagaactggaaaagcggttaaaagagacacctttcaaccctcctaaagtt
gaaagcgcagaaggttttccaagttacgacacagctactgagcaactccacgaggcaggc
tatgacgcttatatcacagggctgtgcttcctctccatggcgaactacctaggttctttt
cttagccctccaaaaattcacgtgtctgccagatcaaaactcattgaacctttttttaac
aagttatttcttatgagagtcatggatatcccctatctcaacttggaaggaccagacttg
caaccaaaacgcgatcatgttctccatgtgacattccccaaagaatggaaaaccagcgac
ctttaccagctttttagtgcctttggtaacattcagatatcctggattgatgacacatca
gcgtttgtctctctcagccagcccgaacaagtacagattgccgtcaataccagcaaatac
gcggaaagctatcggatccagacctatgctgactatgtgggaaaaaaacacgaggagaag
cagatcaagagaaagtggacagaagatagttggaaggaggttgagagaaagcggttaaac
actcagtgcatatcctatgctctgcagaatcactatcaccacgccaatagtcttacctcg
accagcacggtaggaaagagaaatctgagccccagcccagcagaagctgacttggagacc
agaatatcaggggagatttctgacactgagctggagcagacagagtcctgtgcagaatcc
ctctccgagggaaggaaaaaggccaagaaattaaaaaggatgaagaaggagctttcgcca
gcaggaggcctcccgggtagccctgccaagctcttcgaggttcccgacacgtggtaa
DBGET
integrated database retrieval system
